View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10109_low_1 (Length: 530)
Name: NF10109_low_1
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 96 - 517
Target Start/End: Original strand, 476144 - 476586
Alignment:
| Q |
96 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476144 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
476243 |
T |
|
| Q |
196 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476244 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
476343 |
T |
|
| Q |
296 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476344 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
476443 |
T |
|
| Q |
396 |
tacacaatgatgatactgaagaatatattgagcctttgctggcaagttatttgacatccataaggccagatataa---------------------gtca |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
476444 |
tacacaatgatgatactgaagaatatattgagcctttgttggcaagttatttgacatccataaggccagatataatattccttgtgcaacaagtcagtca |
476543 |
T |
|
| Q |
475 |
atttctagattcaccaacctcagcacacttccctagtttgttc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476544 |
atttctagattcaccaacctcagcacacttccctagtttgttc |
476586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 476029 - 476119
Alignment:
| Q |
12 |
tgaatatatattacactgttgattgaaaaaactgtgttaaatttaaagaatgaaaaattgtatcaatttctctacacaataggctacactc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
476029 |
tgaatatatattacactgttgattgaaaaaactgtgttaaatttaaagaatgaaaaattgtatcaatttctctatacaataggctacactc |
476119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University