View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10109_low_11 (Length: 300)
Name: NF10109_low_11
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 475794 - 475538
Alignment:
| Q |
27 |
aattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttctttcaaatcggttatcaaaattttca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
475794 |
aattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttctttcaaatcggttatcaaaattttca |
475695 |
T |
|
| Q |
127 |
cttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
475694 |
cttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgat |
475595 |
T |
|
| Q |
227 |
cactccaattgcgcctatcatgctaactcacatgaagcataagcatcagttaattag |
283 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
475594 |
cactccaattgcgcctatcaagctaactcacatgaagcataagcatcagttaattag |
475538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 449745 - 449620
Alignment:
| Q |
119 |
aattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaag |
218 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| |||| ||||| ||||| |||||||||||||| || | ||||||| |
|
|
| T |
449745 |
aattttcacttcctctgtctcattaaccatagattttggaactatcttctctttaacatcaactacttcttcagctttaccccaaagtacaatatacaag |
449646 |
T |
|
| Q |
219 |
ccaatgatcactccaattgcgcctat |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
449645 |
ccaatgatcactccaattgcgcctat |
449620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 469129 - 469011
Alignment:
| Q |
145 |
ccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
244 |
Q |
| |
|
|||||||||||||| |||| |||| ||| | || ||||| ||||| |||||||||||||| || | |||||| |||||||||||||||||||| ||||| |
|
|
| T |
469129 |
ccatagattttggaactatattctctttaatatcaactacttcttcagctttaccccaaagtacaatatacaaaccaatgatcactccaattgcacctat |
469030 |
T |
|
| Q |
245 |
catgctaactcacatgaag |
263 |
Q |
| |
|
|| |||||| ||||||||| |
|
|
| T |
469029 |
caagctaacacacatgaag |
469011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 457977 - 457916
Alignment:
| Q |
183 |
acatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
244 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
457977 |
acatcttcagctttaccccaaagcacagtatacaagccaatgatcactccaattgcgcctat |
457916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 481303 - 481203
Alignment:
| Q |
153 |
tttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaa |
252 |
Q |
| |
|
||||||||| |||||| |||||| | |||||||||| |||||||||||||| || |||||| || ||||||||||||||||| || |||| ||||| |
|
|
| T |
481303 |
tttggatctgtcttctctttgacttcagctacatcttcagctttaccccaaagtacagtatacaaacctatgatcactccaattgcaccaatcaagctaa |
481204 |
T |
|
| Q |
253 |
c |
253 |
Q |
| |
|
| |
|
|
| T |
481203 |
c |
481203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 475833 - 475803
Alignment:
| Q |
1 |
gatacagtgatgatgacattaattttaatta |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
475833 |
gatacagtgatgatgacattaattttaatta |
475803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 27489261 - 27489370
Alignment:
| Q |
142 |
taaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcc |
241 |
Q |
| |
|
|||| ||||||||| ||| | ||||| ||| |||| ||||||||||| ||||| |||||||| || | ||||||||||||||||||||||||||| || |
|
|
| T |
27489261 |
taacgatagatttttgatttcccttctctttcacatcaactacatcttcagcttttccccaaagaacaatatacaagccaatgatcactccaattgcacc |
27489360 |
T |
|
| Q |
242 |
tatcatgcta |
251 |
Q |
| |
|
||||| |||| |
|
|
| T |
27489361 |
tatcaagcta |
27489370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University