View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_13 (Length: 287)
Name: NF10109_low_13
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 31775443 - 31775696
Alignment:
| Q |
20 |
tactttgattgtatgatcttattctctctttgctttcataaataggaattctagaaatattggtaattaatagagaaaaatatatatgatcactaccatt |
119 |
Q |
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| T |
31775443 |
tactttgattgtatgatcttattctctctttgctttcataaataggaattctagaaatattggtaattaatagagcaaaatatatatgatcactaccatt |
31775542 |
T |
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| Q |
120 |
agttaaaaatattgtgaatat--tatgttatttttagtatatattttttggggtgagagagagaccaaaacatgtattcaggagaaaatatgaaggatta |
217 |
Q |
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| T |
31775543 |
agttaaaaatattgtgaatattatatgttatttttagtatatattttttggggggagagagagaccaaaacatgtattcaggagaaaatatgaaggatta |
31775642 |
T |
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| Q |
218 |
aaatgggccatattatattagaataatcacgtacaagttttaaatttggatttt |
271 |
Q |
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| T |
31775643 |
aaatgggccatattatattggaattatcacgtacaagttttaaatttggatttt |
31775696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 31770793 - 31771034
Alignment:
| Q |
18 |
agtactttgattgtatgatcttattctctctttgctttcataaataggaattctagaaatattggtaattaatagagaaaaatatatatgatcactacca |
117 |
Q |
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| T |
31770793 |
agtactttgattgcttgatcttattctttccttgctttcacaactagaaattctagaaacactactaattaatagagaaaattatat---atcactatca |
31770889 |
T |
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| Q |
118 |
ttagttaaaaatattgtgaatat--tatgttatttttag--tatatattttttggggtgagagagagaccaaaacatgta-ttcaggagaaaatatgaag |
212 |
Q |
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| T |
31770890 |
ttagttaaaaatatttcgaatattatatgttattttcagattatatattttggggggaaagggagagaccaaaacatctattttaggagaaaatataaag |
31770989 |
T |
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| Q |
213 |
gattaaaatgggccatattatattagaataatcacgtacaagtttt |
258 |
Q |
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| T |
31770990 |
ga-taaaatgagccatattatattggaataatcacgtacgagtttt |
31771034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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