View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10109_low_15 (Length: 269)
Name: NF10109_low_15
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9400373 - 9400628
Alignment:
| Q |
1 |
tttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaatgtctcttttatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9400373 |
tttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaatgtctcttttatga |
9400472 |
T |
|
| Q |
101 |
ctgctttcaagtaggagaaattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctcttgttgtactttcttcattactgc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9400473 |
ctgccttcaagtaggagaaattttgtatatcatcttcatctaaaaagtcttttttaactcttgaactcctaatctcttgttgtactttcttcattactgc |
9400572 |
T |
|
| Q |
201 |
agggttctttattaggacagtcattgcccaaactaatgtagctgatgttgtatctg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9400573 |
agggttctttattaggacagtcattgcccaaactaatgtagctgatgttgtatctg |
9400628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 20074135 - 20074390
Alignment:
| Q |
1 |
tttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaatgtctcttttatga |
100 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| ||||| ||| || ||||||| |||||||| ||| | | | ||||||| |||||||||||| | |
|
|
| T |
20074135 |
tttgccggaatttggtagccacctatagtgcacttttcccttgtttctcttggcacaagcaatggggctggcaagtacaatctcagtgtctcttttatca |
20074234 |
T |
|
| Q |
101 |
ctgctttcaagtaggagaaattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctcttgttgtactttcttcattactgc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
20074235 |
ctgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttttaacttttgaatttctaatctcttgttgtactttcttcattactct |
20074334 |
T |
|
| Q |
201 |
agggttctttattaggacagtcattgcccaaactaatgtagctgatgttgtatctg |
256 |
Q |
| |
|
|| || ||||||| ||||||| ||||| ||| ||| |||||||| ||||||| |
|
|
| T |
20074335 |
tggattttttattaatgcagtcatagcccatactgttgtggctgatgtggtatctg |
20074390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 8900676 - 8900929
Alignment:
| Q |
1 |
tttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaatgtctcttttatga |
100 |
Q |
| |
|
||||| ||||| ||||| |||| |||| ||||| ||||| ||| || ||||||| |||||||| ||||||| | |||||||||||||||||||| | |
|
|
| T |
8900676 |
tttgcaggaatttggtagccacttataatgcacttttcccttgtttctcttggcacaagcaatgggcctggtaggtacaatctcaatgtctcttttatca |
8900775 |
T |
|
| Q |
101 |
ctgctttcaagtaggagaaattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctcttgttgtactttcttcattactgc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
8900776 |
ctgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttttaactcttgaattcctaatctcttgttgcactttcttcattactct |
8900875 |
T |
|
| Q |
201 |
agggttctttattaggacagtcattgcccaaactaatgtagctgatgttgtatc |
254 |
Q |
| |
|
|| || ||||||| | ||||||| |||||||||| ||| || ||||| ||||| |
|
|
| T |
8900876 |
tggattttttattaaggcagtcatagcccaaactattgtggcagatgtggtatc |
8900929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 8914659 - 8914814
Alignment:
| Q |
79 |
aatctcaatgtctcttttatgactgctttcaagtaggagaaattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctctt |
178 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
8914659 |
aatctcaatgtctcttttatcactgcctttaagtaggacaaatttcgtatatcatcttcatctataaattcttttttaactcttgaattcctaatctctt |
8914758 |
T |
|
| Q |
179 |
gttgtactttcttcattactgcagggttctttattaggacagtcattgcccaaact |
234 |
Q |
| |
|
|||||||||||||||||||| || || ||||||| | ||||||| ||||||||| |
|
|
| T |
8914759 |
gttgtactttcttcattactcttggattttttattaaggcagtcatagcccaaact |
8914814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8929503 - 8929737
Alignment:
| Q |
1 |
tttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaatgtctcttttatga |
100 |
Q |
| |
|
||||| ||||| ||||| ||||||| | ||||| ||||| ||| || ||||||| ||||||||| ||||||| | |||||||||||||||||||| | |
|
|
| T |
8929503 |
tttgcaggaatatggtagccacctacaatgcacttttcccttgtttctcttggcaaaagcaatggagctggtaggtacaatctcaatgtctcttttatca |
8929602 |
T |
|
| Q |
101 |
ctgctttcaagtaggagaaattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctcttgttgtactttcttcattactgc |
200 |
Q |
| |
|
| || ||||| ||| ||||||||||| ||||||| | |||| ||| || |||||||||||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
8929603 |
ccgccttcaaatagacgaaattttgtagatcatctccgtctagaaaatcctttttaactcttgatcccctaatctcttcttgtactttcttcattactct |
8929702 |
T |
|
| Q |
201 |
agggttctttattaggacagtcattgcccaaacta |
235 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| |||| |
|
|
| T |
8929703 |
tgggttttttattagggcagtcatagcccacacta |
8929737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 256
Target Start/End: Complemental strand, 8979278 - 8979091
Alignment:
| Q |
69 |
tggtaggaataatctcaatgtctcttttatgactgctttcaagtaggaga-aattttgtatatcatcttcatctaaaaattcttttttaactcttgaact |
167 |
Q |
| |
|
||||||| | ||||| |||||||||||||| ||||| ||||| || ||| ||||||| |||||||||||||||||||| ||||||||| ||| | | |
|
|
| T |
8979278 |
tggtaggtacaatcttaatgtctcttttatcactgccttcaaatat-agagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagtt |
8979180 |
T |
|
| Q |
168 |
cctaatctcttgttgtactttcttcattactgcagggttctttattaggacagtcattgcccaaactaatgtagctgatgttgtatctg |
256 |
Q |
| |
|
|||||| || | ||| ||||| |||||||| ||||| ||||||||| ||||||| ||||||||| |||| |||||||| ||||||| |
|
|
| T |
8979179 |
cctaatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctgatgtagtatctg |
8979091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 9000351 - 9000519
Alignment:
| Q |
88 |
gtctcttttatgactgctttcaagtaggagaaattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctcttgttgtactt |
187 |
Q |
| |
|
|||||||| || ||||| ||||| || | |||||||| |||||||||||||||||||| ||||||| | ||| || | ||||| || | |||||||| |
|
|
| T |
9000351 |
gtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaaatctttttcacctcccaaatttctaatttcatcttgtactt |
9000450 |
T |
|
| Q |
188 |
tcttcattactgcagggttctttattaggacagtcattgcccaaactaatgtagctgatgttgtatctg |
256 |
Q |
| |
|
|| |||||||| ||||| || |||| | ||||||| ||||||||| |||| |||| ||| ||||||| |
|
|
| T |
9000451 |
tcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctgctgtggtatctg |
9000519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 8954892 - 8954757
Alignment:
| Q |
119 |
aattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctcttgttgtactttcttcattactgcagggttctttattaggac |
218 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||||||||| || | || || |||| || |||||| |||||||| |||||| |||||||| | |
|
|
| T |
8954892 |
aattttgaatatcatcttcatataaaaaatcttttttaactcccaaatttcttatttcttcttttactttactcattactctagggttttttattagagc |
8954793 |
T |
|
| Q |
219 |
agtcattgcccaaactaatgtagctgatgttgtatc |
254 |
Q |
| |
|
|||||| ||||||||| ||| |||||||| ||||| |
|
|
| T |
8954792 |
agtcatagcccaaactgatgctgctgatgtggtatc |
8954757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 8966432 - 8966551
Alignment:
| Q |
79 |
aatctcaatgtctcttttatgactgctttcaagtaggagaaattttgtatatcatcttcatctaaaaattcttttttaactcttgaactcctaatctctt |
178 |
Q |
| |
|
|||||||| ||||||||||| ||||| || || || | ||||||||| ||||||| ||| |||| |||||||||||| || | | ||||| |||| |
|
|
| T |
8966432 |
aatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagtttctaatttctt |
8966531 |
T |
|
| Q |
179 |
gttgtactttcttcattact |
198 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8966532 |
cttgtactttcttcattact |
8966551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University