View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_21 (Length: 243)
Name: NF10109_low_21
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32159144 - 32158919
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32159144 |
agtgatgtttttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
32159045 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctgacttttcacaagaaacacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
32159044 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
32158945 |
T |
|
| Q |
201 |
acaaggagacatggcaaacaagattt |
226 |
Q |
| |
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||||||||||||||||| |||||||| |
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|
| T |
32158944 |
acaaggagacatggcaatcaagattt |
32158919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 32111738 - 32111532
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| |||| | |||||| || |||| |
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| T |
32111738 |
agtgatgtttttgaaggtgttagtgtaaagtggaaactaatatgcatacaagtcgactcatcaagagttcgacattttgataggggctcctcgcctgtgt |
32111639 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctgacttttcacaagaaacacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
200 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32111638 |
cagaaataagatcatatgagctaacttttcacaagaaacacaaaaacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
32111539 |
T |
|
| Q |
201 |
acaagga |
207 |
Q |
| |
|
||||||| |
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|
| T |
32111538 |
acaagga |
32111532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32183445 - 32183221
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||| || ||| |||| ||||| || | ||| || ||||||| |||||||||| | |||| |
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| T |
32183445 |
agtgatgttttcgaaggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgt |
32183346 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctgacttttcacaagaaacacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32183345 |
cagaaataagatcctatgagctgacttttcacaagaagcacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
32183246 |
T |
|
| Q |
201 |
acaaggagacatggcaaacaagatt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
32183245 |
acaaggagacatggcaaacaagatt |
32183221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32175424 - 32175203
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| || |||||||| ||||| || | ||| || ||| |||||||| |||| ||| || |
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| T |
32175424 |
agtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatga---ctcagccgagt |
32175328 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctgacttttcacaagaaacacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
200 |
Q |
| |
|
||||| ||||||| |||||||| | ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32175327 |
cagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagctaaacaaattaa |
32175228 |
T |
|
| Q |
201 |
acaaggagacatggcaaacaagatt |
225 |
Q |
| |
|
||||||| ||| ||||| ||||||| |
|
|
| T |
32175227 |
acaaggaaacacggcaatcaagatt |
32175203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32119781 - 32119557
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| || ||||| || ||| || | ||| || |||| | ||||||||||| |||||| |
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|
| T |
32119781 |
agtgatgtttttgaaggtattagtgtaaagtggaaactaatttgcatacaggtagacaagtcgcggattcgaagttacagtgatgactcctcagccgtgt |
32119682 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctgacttttcacaagaaacacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||| ||||| || |
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|
| T |
32119681 |
cagaaataagatcctatgagctaacttttcacaagaaacacaagaacaagattttcgattcatatttgccttatgtgattgagatagctaatcaaatgaa |
32119582 |
T |
|
| Q |
201 |
acaaggagacatggcaaacaagatt |
225 |
Q |
| |
|
||||||| ||||||||| ||||||| |
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|
| T |
32119581 |
acaaggaaacatggcaatcaagatt |
32119557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32205415 - 32205639
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||| ||||||| ||||||| || |||| ||||| ||||| | |||| || ||||| || ||| |
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|
| T |
32205415 |
agtgatgattttgaaggtattagagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacgcctcatccatgt |
32205514 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctgacttttcacaagaaacacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
200 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32205515 |
cagaaattagatcctatgaactaacttttcacaagaaacacaagaacaagatcatcgattcatatttgccttatgtgatggagatggctaaacaaattaa |
32205614 |
T |
|
| Q |
201 |
acaaggagacatggcaaacaagatt |
225 |
Q |
| |
|
| ||| | ||||||| | ||||||| |
|
|
| T |
32205615 |
agaagcaaacatggctatcaagatt |
32205639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32211136 - 32211360
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||| ||||||| ||||||| || |||| ||||| ||||| | |||| || ||||| |||||| |
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|
| T |
32211136 |
agtgatgattttgaaggtattacagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacacctcatccgtgt |
32211235 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctgacttttcacaagaaacacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
200 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||| ||| |||| | ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32211236 |
cagaaattagatcctatgaactaacttttcacaagaaacacaagaacacgatcttcgattcatatttcccttatgtgatggagatagctaaacaaattaa |
32211335 |
T |
|
| Q |
201 |
acaaggagacatggcaaacaagatt |
225 |
Q |
| |
|
||||||| ||||||| | ||||||| |
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|
| T |
32211336 |
acaaggaaacatggctatcaagatt |
32211360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 32178544 - 32178470
Alignment:
| Q |
10 |
tttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataat |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32178544 |
tttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataat |
32178470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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