View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10109_low_23 (Length: 241)

Name: NF10109_low_23
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10109_low_23
NF10109_low_23
[»] chr1 (1 HSPs)
chr1 (17-191)||(27815001-27815175)
[»] chr3 (2 HSPs)
chr3 (89-226)||(12685407-12685544)
chr3 (32-67)||(12685548-12685583)
[»] chr7 (1 HSPs)
chr7 (71-226)||(6171633-6171788)
[»] chr8 (1 HSPs)
chr8 (100-226)||(30786895-30787021)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 27815001 - 27815175
Alignment:
Q  17 catctctagccaccatttaatttcattcatgaagaacaaagcctcccagagaacaaacccaaggctaatcgaatcataaattgttgaatcgaagcttatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27815001 catctctagccaccatttaatttcattcatgaagaacaaagcctcctagagaacaaacccaaggctaatcgaatcataaactgttgaatcgaagcttatg 27815100  T
Q  117 cagttgcagcaatgaacatgtcaagtgacaaatgatcaagaaattgaattatttgttgcataagaggttaatatt 191  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  27815101 cagttgcagcaatgaacatgtgaagtgacaatttatcaagaaattgaattatttgttgcataagaggttaatatt 27815175  T

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Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 12685544 - 12685407
Alignment:
Q  89 atcataaattgttgaatcgaagcttatgcagttgcagcaatgaacatgtcaagtgacaaatgatcaagaaattgaattatttgttgcataagaggttaat 188  Q
    |||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  12685544 atcataaactctcgaatcgaagcttatgcagttgcagcaatgaacatgtgaagtgacaattgatcaagaaattgaattatttgttgcataagaggttcat 12685445  T
Q  189 attcgaatcaaagatctgttgttttctaccataaattt 226  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12685444 attcgaatcaaagatctgttgttttctaccataaattt 12685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 12685583 - 12685548
Alignment:
Q  32 tttaatttcattcatgaagaacaaagcctcccagag 67  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12685583 tttaatttcattcatgaagaacaaagccttccagag 12685548  T

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Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 6171633 - 6171788
Alignment:
Q  71 aaacccaaggctaatcgaatcataaattgttgaatcgaagcttatgcagttgcagcaatgaacatgtcaagtgacaaatgatcaagaaattgaattattt 170  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||  |||||| |||||||||| | ||||||||| ||||||||||||||||||||||    
T  6171633 aaacccaaggttaatcgaatcataaactcttgaatcgaagcttatgttgttgcaacaatgaacatatgaagtgacaattgatcaagaaattgaattattt 6171732  T
Q  171 gttgcataagaggttaatattcgaatcaaagatctgttgttttctaccataaattt 226  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  6171733 gttgcataagaggttaatattcaaatcacagatctgttgttttctaccataaattt 6171788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 30786895 - 30787021
Alignment:
Q  100 ttgaatcgaagcttatgcagttgcagcaatgaacatgtcaagtgacaaatgatcaagaaattgaattatttgttgcataagaggttaatattcgaatcaa 199  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30786895 ttgaatcaaagcttatgcagttgcagcaatgaacatgtgaagtgacaattgatcaagaaattgaattatttgttgcataagaggttaatatttgaatcaa 30786994  T
Q  200 agatctgttgttttctaccataaattt 226  Q
    |||||||||||||||||||||||||||    
T  30786995 agatctgttgttttctaccataaattt 30787021  T

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