View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_25 (Length: 239)
Name: NF10109_low_25
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 3758118 - 3758335
Alignment:
| Q |
8 |
tttcaccctcctacctttccttcttatttgttttactaacaaaaaatgtacaagtttgaaaagagatcaacaaaccacgacaggttcataaacccttcat |
107 |
Q |
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| T |
3758118 |
tttcaccctcctacctttcctttttatttgttttaccaacaaaaaatgtacaagtttgagaagagatcaacaatccacgacaggttcataaacccttcat |
3758217 |
T |
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| Q |
108 |
tctcttccaccctcttagaccaaatttaccgttccattgacgaaggagaaacaaaattaaccaccgaaacaaccaaattttacagagaacaaaaaccaac |
207 |
Q |
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| T |
3758218 |
tctcttccaccctcttagaccaaatttaccgttccatcgacgaaggagaaacaaaattaaccaccgaaacaaccaaattttacagagaacaaaaaccaac |
3758317 |
T |
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| Q |
208 |
ggttataaacaaaccaac |
225 |
Q |
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| T |
3758318 |
ggttataaacaaaccaac |
3758335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 48344577 - 48344626
Alignment:
| Q |
107 |
ttctcttccaccctcttagaccaaatttaccgttccattgacgaaggaga |
156 |
Q |
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| T |
48344577 |
ttctcttccacactgctcgaccaaatttaccgttccatcgacgaaggaga |
48344626 |
T |
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