View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_27 (Length: 237)
Name: NF10109_low_27
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34980383 - 34980165
Alignment:
| Q |
1 |
tataatcaatattgaagctaaaaatattatattgtatgcataatggctgttcgatttaactgnnnnnnntatacagcttatagggacgggaccagtaata |
100 |
Q |
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| T |
34980383 |
tataatcaatattgaagctaaaaatattatattgcatgcatgatggctgttcgatttaactgaaaaaaatatacagctcata-----gggaccagtaata |
34980289 |
T |
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| Q |
101 |
cgatttgctttctatgtacagcggaaatggtcactccaaaaaatagttgatatatatcccattgatggaattaatcgtagcttattgcttaagacgattt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980288 |
cgatttgctttctatgtacagcggaaatggccactccaaaaaatagttgatatatatcccattgatggaattaatcgtagcttattgcttaagacgattt |
34980189 |
T |
|
| Q |
201 |
gaaaattaaagcaaagtaaaaagtg |
225 |
Q |
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|||||||||||| |||||||||||| |
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| T |
34980188 |
gaaaattaaagc-aagtaaaaagtg |
34980165 |
T |
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