View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_28 (Length: 237)
Name: NF10109_low_28
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 29689895 - 29690098
Alignment:
| Q |
18 |
gaaaagagggctgcgggtttgactgacgtgcatattttagttgtgttcctcatgcataattttgtggaccacattttaatgttaactaataattaagtaa |
117 |
Q |
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| T |
29689895 |
gaaaagaggactgcgggtttgagtgacgtgcatattttagttgtgttcctcatgcataattttgtggaccacattttaatgttaactaataattaagtaa |
29689994 |
T |
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| Q |
118 |
gatatttgacccactattgattttatgcttcacaatataattttaattaataagtagtaagatacgagttctatcaaattaattaatataagtagtaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29689995 |
gatatttgacccactattgattttatgcttcacaatataattttaattaataagtagtaagatacgagttctatcaaattaattaatataagcagtaaga |
29690094 |
T |
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| Q |
218 |
tatg |
221 |
Q |
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|||| |
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| T |
29690095 |
tatg |
29690098 |
T |
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