View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_29 (Length: 229)
Name: NF10109_low_29
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27814758 - 27814983
Alignment:
| Q |
1 |
catcttcctggaatttatttccattcaaatggtggctaacaaactctgtagaagccaaattgctttgtgtgtcacaccagctttattattgttggaaagc |
100 |
Q |
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| T |
27814758 |
catcttcctggaatttttttccattcaaatgttggctaacaaactctgtagaagccaaattgctttgtgtgtcacaccagctttat---tgttggaaagc |
27814854 |
T |
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| Q |
101 |
taagaagttgacctttcaaagccaaattcatctctcgccactttactgaaatgttgtgttttttattgattttgttttactgaaccatgttattccatct |
200 |
Q |
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| T |
27814855 |
taagaagttgacctttcgaagccaaattcatctctcgccactttactgaaatgttgtgctttttattgattttgttttactgaaccatgttattccatct |
27814954 |
T |
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| Q |
201 |
ctagctcaaatggtggctaaccatgtttc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27814955 |
ctagctcaaatggtggctaaccatgtttc |
27814983 |
T |
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