View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10109_low_3 (Length: 421)
Name: NF10109_low_3
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 32159144 - 32158739
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32159144 |
agtgatgtttttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
32159045 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32159044 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
32158945 |
T |
|
| Q |
201 |
acaaggagacatggcaatcaagatttactcaaatgaatatagctggtctggtgatgtcaagtttaatcatccaatgagtttcgacactcttgcaattgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32158944 |
acaaggagacatggcaatcaagatttactcaaatgaatatagctggtctggtgatgtcaagtttaatcatccaatgagtttcgacactcttgcaattgat |
32158845 |
T |
|
| Q |
301 |
gaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagttttatagaagaactgggaaagcttggaaacgcggttacttgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32158844 |
gaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagttttatagaagaacagggaaagcttggaaacgcggttacttgt |
32158745 |
T |
|
| Q |
401 |
tgtatg |
406 |
Q |
| |
|
|||||| |
|
|
| T |
32158744 |
tgtatg |
32158739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 32183445 - 32183037
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||| || ||| |||| ||||| || | ||| || ||||||| |||||||||| | |||| |
|
|
| T |
32183445 |
agtgatgttttcgaaggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgt |
32183346 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32183345 |
cagaaataagatcctatgagctgacttttcacaagaagcacaaagacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
32183246 |
T |
|
| Q |
201 |
acaaggagacatggcaatcaagatttactcaaatgaatat---agctggtctggtgatgtcaagtttaatcatccaatgagtttcgacactcttgcaatt |
297 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||| | |||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
32183245 |
acaaggagacatggcaaacaagattcactcaaatgaatatggtagctggcgtcatgatgtcaagttcaatcatccaatgagtttcaacactcttgcaatt |
32183146 |
T |
|
| Q |
298 |
gatgaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagttttatagaagaactgggaaagcttggaaacgcggttact |
397 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32183145 |
gatgaagaacttcaaagggatattgtgaatgatttggacaaatttgtgagggctagagagttttatagaagaacagggaaagcttggaaacgcggttact |
32183046 |
T |
|
| Q |
398 |
tgttgtatg |
406 |
Q |
| |
|
||||||||| |
|
|
| T |
32183045 |
tgttgtatg |
32183037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 32111738 - 32111327
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| |||| | |||||| || |||| |
|
|
| T |
32111738 |
agtgatgtttttgaaggtgttagtgtaaagtggaaactaatatgcatacaagtcgactcatcaagagttcgacattttgataggggctcctcgcctgtgt |
32111639 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32111638 |
cagaaataagatcatatgagctaacttttcacaagaaacacaaaaacaagatcattgattcatatttgccttatgtgatggagatagctaaacaaattaa |
32111539 |
T |
|
| Q |
201 |
acaaggagacatggcaatcaagatttactcaaatgaatata---gctggtctggtga---tgtcaagtttaatcatccaatgagtttcgacactcttgca |
294 |
Q |
| |
|
||||||| || || | |||||| ||||||||||||||| | |||| | ||| | | ||||| || ||||||||||||||| |||||||||| |
|
|
| T |
32111538 |
acaaggaattgtgacacttaagattcactcaaatgaatataatcgttggtgtcatgatcctattaagttcaaccatccaatgagtttcaccactcttgca |
32111439 |
T |
|
| Q |
295 |
attgatgaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagttttatagaagaactgggaaagcttggaaacgcggtt |
394 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32111438 |
attgatgaagagcttcaaagggaaattaagaatgatttggacaaatttgtgagggctaaagaattttatagaagaacagggaaagcttggaaacgcggtt |
32111339 |
T |
|
| Q |
395 |
acttgttgtatg |
406 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32111338 |
acttgttgtatg |
32111327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 32205415 - 32205824
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||| ||||||| ||||||| || |||| ||||| ||||| | |||| || ||||| || ||| |
|
|
| T |
32205415 |
agtgatgattttgaaggtattagagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacgcctcatccatgt |
32205514 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
200 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
32205515 |
cagaaattagatcctatgaactaacttttcacaagaaacacaagaacaagatcatcgattcatatttgccttatgtgatggagatggctaaacaaattaa |
32205614 |
T |
|
| Q |
201 |
acaaggagacatggcaatcaagatttactcaaatgaatatag---ctggtctggtga---tgtcaagtttaatcatccaatgagtttcgacactcttgca |
294 |
Q |
| |
|
| ||| | ||||||| ||||||||| |||||||||| ||| | |||| | ||| ||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
32205615 |
agaagcaaacatggctatcaagattcactcaaatgactatggttgctggagtcatgaacctgtcaagttcaaccatccaatgagtttcaacactcttgca |
32205714 |
T |
|
| Q |
295 |
attgatgaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagttttatagaagaactgggaaagcttggaaacgcggtt |
394 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| ||||||| | | | |||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
32205715 |
attgatgaagagcttcaaagggaaattatgaatgatttggacaattttgtgaaggccaaagagttttatagaagaacagggaaagcttggcaacgcggtt |
32205814 |
T |
|
| Q |
395 |
acttgttgta |
404 |
Q |
| |
|
|||||||||| |
|
|
| T |
32205815 |
acttgttgta |
32205824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 32211136 - 32211547
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||| ||||||| ||||||| || |||| ||||| ||||| | |||| || ||||| |||||| |
|
|
| T |
32211136 |
agtgatgattttgaaggtattacagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacacctcatccgtgt |
32211235 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
200 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
32211236 |
cagaaattagatcctatgaactaacttttcacaagaaacacaagaacacgatcttcgattcatatttcccttatgtgatggagatagctaaacaaattaa |
32211335 |
T |
|
| Q |
201 |
acaaggagacatggcaatcaagatttactcaaatgaatatagctggtctgg-----tga---tgtcaagtttaatcatccaatgagtttcgacactcttg |
292 |
Q |
| |
|
||||||| ||||||| ||||||||| ||||| |||| || | || |||| ||| ||||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
32211336 |
acaaggaaacatggctatcaagattctctcaactgaacatggatg--ctggagccatgaacctgtcaagttcaaccatccaatgagtttcaacactcttg |
32211433 |
T |
|
| Q |
293 |
caattgatgaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagttttatagaagaactgggaaagcttggaaacgcgg |
392 |
Q |
| |
|
|||||||| ||| |||| |||||| |||| ||||||||||||||| ||||| | | | |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
32211434 |
caattgatatagaacttcgaagggaaattatgaatgatttggacaattttgtcaaagccaaagagttttatagaagaacaggaaaagcttggcaacgcgg |
32211533 |
T |
|
| Q |
393 |
ttacttgttgtatg |
406 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32211534 |
ttacttgttgtatg |
32211547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32119781 - 32119548
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| || ||||| || ||| || | ||| || |||| | ||||||||||| |||||| |
|
|
| T |
32119781 |
agtgatgtttttgaaggtattagtgtaaagtggaaactaatttgcatacaggtagacaagtcgcggattcgaagttacagtgatgactcctcagccgtgt |
32119682 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || || |
|
|
| T |
32119681 |
cagaaataagatcctatgagctaacttttcacaagaaacacaagaacaagattttcgattcatatttgccttatgtgattgagatagctaatcaaatgaa |
32119582 |
T |
|
| Q |
201 |
acaaggagacatggcaatcaagatttactcaaat |
234 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |
|
|
| T |
32119581 |
acaaggaaacatggcaatcaagattcgctcaaat |
32119548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 404
Target Start/End: Complemental strand, 32119496 - 32119351
Alignment:
| Q |
259 |
aagtttaatcatccaatgagtttcgacactcttgcaattgatgaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagt |
358 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
32119496 |
aagttcaaccatccaatgagtttcaacactcttgcaattgatgaagggcttcaaagggatattatgaatgatttggacaaatttgtgagtgctagagagt |
32119397 |
T |
|
| Q |
359 |
tttatagaagaactgggaaagcttggaaacgcggttacttgttgta |
404 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
32119396 |
tttatagaagaaccggcaaagcttggaaacgcggttacttgttgta |
32119351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32175424 - 32175188
Alignment:
| Q |
1 |
agtgatgtctttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgt |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| || |||||||| ||||| || | ||| || ||| |||||||| |||| ||| || |
|
|
| T |
32175424 |
agtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatga---ctcagccgagt |
32175328 |
T |
|
| Q |
101 |
cagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagctaaacagattaa |
200 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||| || ||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
32175327 |
cagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagctaaacaaattaa |
32175228 |
T |
|
| Q |
201 |
acaaggagacatggcaatcaagatttactcaaatgaatat |
240 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||| ||||||| |
|
|
| T |
32175227 |
acaaggaaacacggcaatcaagattcactcaattgaatat |
32175188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 259 - 406
Target Start/End: Complemental strand, 32157468 - 32157321
Alignment:
| Q |
259 |
aagtttaatcatccaatgagtttcgacactcttgcaattgatgaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagt |
358 |
Q |
| |
|
||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || | |
|
|
| T |
32157468 |
aagttcaaccatccaatgactttcaacactcttgcaattgatgaagagcttcaaagggaaattaagaatgatttggacaaatttgtgagggataatgaat |
32157369 |
T |
|
| Q |
359 |
tttatagaagaactgggaaagcttggaaacgcggttacttgttgtatg |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32157368 |
tttatagaagaaccgggaaagcttggaaacgcggttacttgttgtatg |
32157321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 32175145 - 32175001
Alignment:
| Q |
259 |
aagtttaatcatccaatgagtttcgacactcttgcaattgatgaagagcttcaaagggatattaagaatgatttggacaaatttgtgaggtctagagagt |
358 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||| || |||||| |
|
|
| T |
32175145 |
aagttcaaccatccaatgagtttcaacactcttgcgattgatgaagatcttcaaagggaaattatgaacgatttggacaaatttgtgagggctggagagt |
32175046 |
T |
|
| Q |
359 |
tttatagaagaactgggaaagcttggaaacgcggttacttgttgt |
403 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32175045 |
tttctagaagaacagggaaagcttggaaacgcggttacttgttgt |
32175001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 32178544 - 32178470
Alignment:
| Q |
10 |
tttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataat |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32178544 |
tttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataat |
32178470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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