View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_30 (Length: 227)
Name: NF10109_low_30
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 10034111 - 10034309
Alignment:
| Q |
1 |
ttccttgtggttgcctactaggtatagataaggccttagtggaacattctagtatttccaccagctgtgtgaccgttaggctacaactgtagtagtagcc |
100 |
Q |
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| T |
10034111 |
ttccttttgattgcctactaggttaagataaggccttagtggaatattctagtatttccaccagctgtgtgaccgttaggccacagctgtagcagtagcc |
10034210 |
T |
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| Q |
101 |
aaggactgtcctttaaggatgagtcacctcttgtaatattcccc--tatatattctaccatctaatgaaataaaggcagcaatcattatcaagaaagtta |
198 |
Q |
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| T |
10034211 |
-aggactttcctttaaggatgagtcacc-catgtaatattcccctatatatattctaccatctaatgaaataaaggcatcaatcattatcatgaaagtta |
10034308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 39606655 - 39606806
Alignment:
| Q |
11 |
ttgcctactaggtatagataaggccttagtggaacattctagtatttccaccagctgtgtgaccgttaggctacaactgtagtagtagccaaggactgtc |
110 |
Q |
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| T |
39606655 |
ttgcctattaggaatggataaggccttagtggaacattcttgtatttccaccagttgtaggaccgttaggatacagctgtagcagtagccaa-gactgtc |
39606753 |
T |
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| Q |
111 |
ctttaaggatgagtcacctcttgtaatattcccctatatatt-ctaccatctaa |
163 |
Q |
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| T |
39606754 |
ctttaaggatgagtca-ctattgtattattcccctatatattactaccatctaa |
39606806 |
T |
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