View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_32 (Length: 201)
Name: NF10109_low_32
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 50967297 - 50967469
Alignment:
| Q |
14 |
tgaacatgtttgggttctcattgtttagaagaatcataagttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaac |
113 |
Q |
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| T |
50967297 |
tgaacatgtttgggtactcattgtttagaagaatcataagttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaac |
50967396 |
T |
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| Q |
114 |
ttgacaaactcatttacttgtatgaaattatggatgaataaaaaattatttcatcaaagaatattaatatatt |
186 |
Q |
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| T |
50967397 |
ttgacaaactcatttacttgtatgaaattatggatgaataaaaaattatttcatcaaagaatattaatatatt |
50967469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 50997306 - 50997425
Alignment:
| Q |
14 |
tgaacatgtttgggttctcattgtttagaagaatcataagttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaac |
113 |
Q |
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| T |
50997306 |
tgaaaatgtttgggaactcattgtctagaggaatc-taagttattgccaaatcaactgactttttttct---aagagctatggctccaaatatttgtaag |
50997401 |
T |
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| Q |
114 |
ttgacaaactcatttacttgtatg |
137 |
Q |
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| T |
50997402 |
ttgacaaactcatttactagtatg |
50997425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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