View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10109_low_4 (Length: 389)

Name: NF10109_low_4
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10109_low_4
NF10109_low_4
[»] chr8 (2 HSPs)
chr8 (1-187)||(40164336-40164522)
chr8 (310-379)||(40164142-40164211)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 40164522 - 40164336
Alignment:
1 gttttacacaaatcaatacatgcaccatttttgagacaaatgtattctagaattccattttccaggcataattaaacgtataatatttttcatgtaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40164522 gttttacacaaatcaatacatgcaccatttttgagacaaatgtattctagaattccattttccaggcataattaaacgtataatatttttcatgtaatga 40164423  T
101 tccttactatttaaaatgattttcaaaatttagtcnnnnnnnngttataaaatattattaatcgtatcttaatcaaaagccaactaa 187  Q
    |||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||    
40164422 tccttactatttaaaatgattttcaaaatttagtcaaaaaaaagttataaaaaattattaatcgtatcttaatcaaaagccaactaa 40164336  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 40164211 - 40164142
Alignment:
310 tgtctggtttctttcttcaaacaacaacgctaccggcgagcataatctcgccggcaaattgccctttgct 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
40164211 tgtctggtttctttcttcaaacaacaacgctaccggcgagcataatctcgccggcaaattgccctatgct 40164142  T

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