View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_4 (Length: 389)
Name: NF10109_low_4
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 40164522 - 40164336
Alignment:
| Q |
1 |
gttttacacaaatcaatacatgcaccatttttgagacaaatgtattctagaattccattttccaggcataattaaacgtataatatttttcatgtaatga |
100 |
Q |
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| T |
40164522 |
gttttacacaaatcaatacatgcaccatttttgagacaaatgtattctagaattccattttccaggcataattaaacgtataatatttttcatgtaatga |
40164423 |
T |
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| Q |
101 |
tccttactatttaaaatgattttcaaaatttagtcnnnnnnnngttataaaatattattaatcgtatcttaatcaaaagccaactaa |
187 |
Q |
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| T |
40164422 |
tccttactatttaaaatgattttcaaaatttagtcaaaaaaaagttataaaaaattattaatcgtatcttaatcaaaagccaactaa |
40164336 |
T |
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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 40164211 - 40164142
Alignment:
| Q |
310 |
tgtctggtttctttcttcaaacaacaacgctaccggcgagcataatctcgccggcaaattgccctttgct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40164211 |
tgtctggtttctttcttcaaacaacaacgctaccggcgagcataatctcgccggcaaattgccctatgct |
40164142 |
T |
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