View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_low_8 (Length: 338)
Name: NF10109_low_8
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 54423794 - 54424114
Alignment:
| Q |
11 |
caaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttagaaacgcgatcttgtataacacattgcagaga |
110 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54423794 |
caaaggctgcctgttcttgggaaatccatttgttaataagtggacgaagacgattgaccaggaccttagaaa--cgatcttgtataacacattgcagaga |
54423891 |
T |
|
| Q |
111 |
gaaataggtcgaaggtcccgcatggatt-cggattatcaccctttggtgcaagcactatgtttgtagcatttaaatct-ggggtagataactcg------ |
202 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54423892 |
gaaataggtcgaaggtcccgcatggattccagattatcaccctttggtgcaagcactatgtttgtagcatttaaatctgggggtagataactcgaagtct |
54423991 |
T |
|
| Q |
203 |
--aagctaaccaagactaggcagaagagaatatttcatccccgatatcttcccaaaatctg-ggtagaaagccgggttaaggctgtctggcccaggtgat |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
54423992 |
caaagctaaccaagacgaggcagaagagaatatttcatcaccgatatctttccaaaatctgtggtagaaaatcgggttaaggccgtctggcccaggtgat |
54424091 |
T |
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| Q |
300 |
ttatcgggatgcatgttaaaaat |
322 |
Q |
| |
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||||| | ||||||||||||||| |
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| T |
54424092 |
ttatccgaatgcatgttaaaaat |
54424114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 20121054 - 20120742
Alignment:
| Q |
11 |
caaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttagaaacgcgatcttgtataacacattgcagaga |
110 |
Q |
| |
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|||||||||| ||||||||| |||| |||||||| || | |||| | ||||||||| | ||||||||||| || |||||||| | ||||| |||||| |
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| T |
20121054 |
caaaggctgcttgttcttgggaaatccatttgttgattaatggatggagacgattggcaaggaccttagagaca--atcttgtacagtacattacagaga |
20120957 |
T |
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| Q |
111 |
gaaataggtcgaaggtcccgcatggattc-ggattatcaccctttggtgcaagcactatgtttgtagcatttaaatctggggt-agataactcgaagcta |
208 |
Q |
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|||||||| |||||||| ||||||||||| ||||| || |||||||| || || |||||||||||| ||||||| ||||||| ||| || | ||||| | |
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| T |
20120956 |
gaaataggccgaaggtctcgcatggattccggattgtctccctttggagcgagaactatgtttgtaacatttaattctgggggcagagaagttgaagcca |
20120857 |
T |
|
| Q |
209 |
accaagactaggcagaagagaatatttcatccccgatatcttcccaaaatctg-ggtagaaagccgggttaaggctgtctggcccaggtgatttatcggg |
307 |
Q |
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|||||||| ||||| ||||||| ||||| ||||| || || |||||||| || ||||||||||||||||||||| |||||| || || |||||||| || |
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| T |
20120856 |
accaagacaaggcaaaagagaaaatttcgtccccaatgtcctcccaaaacctatggtagaaagccgggttaaggccgtctgggcccggggatttatccgg |
20120757 |
T |
|
| Q |
308 |
atgcatgttaaaaat |
322 |
Q |
| |
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||||||||| ||||| |
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| T |
20120756 |
atgcatgttgaaaat |
20120742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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