View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10110_1D_high_6 (Length: 413)
Name: NF10110_1D_high_6
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_high_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 24167424 - 24167824
Alignment:
| Q |
7 |
tcaatgagatggacatctatatagtaagatacatgtagaagatagcacatgttggccctttacagtataccttttgcaacaaggtattaaaaattagaat |
106 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24167424 |
tcaatgagatgggcatatatatagtaagatacatgtagaagataag------tggccctttacagtataccttttgcaacaaggtattaaaaattagaat |
24167517 |
T |
|
| Q |
107 |
accttgtgttacacttgtaccaaacaccttattgaatgaaaatacccttcttgcatcttttccttgcttgattggatttacaatcatcatgtctccattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24167518 |
accttgtgttacacttgtaccaaacaccttattgaatgaaaatacccttcttgcatcttttccttgcttgattggatttacaatcatcatgtctccattt |
24167617 |
T |
|
| Q |
207 |
tctccaatatagtcaactgtcgactgtccatttgattgtcccggtaagaagggtctgactctacaatagaccctaatggctcctgtatgacagacagaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24167618 |
tctccaatatagtcaactgtcgactgtccatttgattgtcccggtaagaagggtctgactctacaatagaccctaatagctcctgtatgacagacagaaa |
24167717 |
T |
|
| Q |
307 |
attcattaatcaattcatcaaactcattgctaagaagcgtcataagaatttcttatgtacctttgaggtcttgtacttgattgtaaagagaacggttctc |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24167718 |
attcattaatcaattcatcaaattcattgctaagaagcgtcgtaagaatttcttatgtacctttgaggtcttgtacttgattgtaaagagaacggttctc |
24167817 |
T |
|
| Q |
407 |
ttccaaa |
413 |
Q |
| |
|
||||||| |
|
|
| T |
24167818 |
ttccaaa |
24167824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 42235573 - 42235742
Alignment:
| Q |
129 |
aacaccttattgaatgaaaatacccttcttgcatcttttccttgcttgattggatttacaatcatcatgtctccattttctccaatatagtcaactgtcg |
228 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| ||||| | ||||| |||||||| |||| |||||||||||| ||||| || ||||| | |
|
|
| T |
42235573 |
aacaccttattgaatgaaaatacttttctagcatcttttccctgcttaaggggattcacaatcatgatgtttccattttctcctatataatcgactgtag |
42235672 |
T |
|
| Q |
229 |
actgtccatttgattgtcccggtaagaagggtctgactctacaatagaccctaatggctcctgtatgaca |
298 |
Q |
| |
|
| ||||||||||||||||| |||||||| || || |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
42235673 |
attgtccatttgattgtcctggtaagaaaggcctcactctacaatagaccctaatggatcctgtaagaca |
42235742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 42235812 - 42235858
Alignment:
| Q |
363 |
gtacctttgaggtcttgtacttgattgtaaagagaacggttctcttc |
409 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
42235812 |
gtacctttgaggtctatcacttgattgtaaagagagcggttctcttc |
42235858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University