View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_1D_low_1 (Length: 683)

Name: NF10110_1D_low_1
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_1D_low_1
NF10110_1D_low_1
[»] chr6 (1 HSPs)
chr6 (1-668)||(23333180-23333847)


Alignment Details
Target: chr6 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Original strand, 23333180 - 23333847
Alignment:
Q  1 tcgcctaatattcaaaacaacatgtggccagcaaaatagagaagaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333180 tcgcctaatattcaaaacaacatgtggccagcaaaatagagaagaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaattt 23333279  T
Q  101 acgttggttaattaaaatctggtgctcagcttaattttaatggtcaagatagaaagactccataagaaaaaatacggcagtccaaaaagaatccaccaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23333280 acgttggttaattaaaatctggtgctcagcttaattttaatggtcaagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccaca 23333379  T
Q  201 ctggttgcaaatttgttatactttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatct 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  23333380 ctggttgcaaatttgttataccttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatct 23333479  T
Q  301 tcgtaatgacgacattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  23333480 tcgtaatgacgacattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcag 23333579  T
Q  401 ttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333580 ttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaa 23333679  T
Q  501 caacagttcctgaggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaac 600  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333680 caacagttcctgaggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaac 23333779  T
Q  601 ctctttgggggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc 668  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  23333780 ctcttggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc 23333847  T

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