View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_1D_low_10 (Length: 314)

Name: NF10110_1D_low_10
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_1D_low_10
NF10110_1D_low_10
[»] chr3 (2 HSPs)
chr3 (9-141)||(1041897-1042029)
chr3 (191-308)||(1042079-1042196)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 1041897 - 1042029
Alignment:
Q  9 gaaatgaataacatagcaaaatagatcaaaactgaaagcaaatttaaatgagattgatgtgcggttatgttgagaagagagatgtgaaacattgagagat 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1041897 gaaatgaataagatagcaaaatagatcaaaactgaaagcaaatttaaatgagattgatgtgcggttatgttgagaagagagatgtgaaacattgagagat 1041996  T
Q  109 caaatgcaaaaatcttatgtggttggattgtcg 141  Q
    |||||||||||||||||||||||||| ||||||    
T  1041997 caaatgcaaaaatcttatgtggttggtttgtcg 1042029  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 191 - 308
Target Start/End: Original strand, 1042079 - 1042196
Alignment:
Q  191 cacaagatgggtgtcatgaccgtgataccaagttatgaaatatggcatcgatggattaacaggttataaaatagaacatgtagtagaaatgagaaaggtt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1042079 cacaagatgggtgtcatgaccgtgataccaagttatgaaatatggcatcgatggattaacaggttataaaatagaacatgtagtagaaatgagaaaggtt 1042178  T
Q  291 atctttgaatgattaatc 308  Q
    ||||||||||||||||||    
T  1042179 atctttgaatgattaatc 1042196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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