View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_1D_low_13 (Length: 302)

Name: NF10110_1D_low_13
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_1D_low_13
NF10110_1D_low_13
[»] chr3 (1 HSPs)
chr3 (23-302)||(32258756-32259037)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 32258756 - 32259037
Alignment:
Q  23 aagctaactattttttcttctttaaaataattttgagaaaaaagaataatttggacaagtatatcttctagcttcctattattcgtacctttgatcatat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32258756 aagctaactattttttcttctttaaaataattttgagaaaaaagaataatttggacaagtatatcttctagcttcctattattcgtacctttgatcatat 32258855  T
Q  123 atctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaaataccaaacgcgtgtc--tatcatagc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  32258856 atctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaaataccaaacgcgtgtctatatcatagc 32258955  T
Q  221 ttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtctcctccattt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32258956 ttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtctcctccattt 32259037  T

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