View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_1D_low_18 (Length: 274)

Name: NF10110_1D_low_18
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_1D_low_18
NF10110_1D_low_18
[»] chr8 (1 HSPs)
chr8 (14-268)||(34396744-34396998)
[»] chr3 (1 HSPs)
chr3 (82-161)||(38831886-38831965)
[»] chr6 (1 HSPs)
chr6 (106-155)||(7997452-7997501)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 34396998 - 34396744
Alignment:
Q  14 gaagagaagtgagcttaatgagaagatttgtatcatgatggagaagctcggcaactaaatcatagagaccatttgcagctgctaaatcaataggtgttgc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34396998 gaagagaagtgagcttaatgagaagatttgtatcatgatggagaagctcagcaactaaatcatagagaccatttgcagctgctaaatcaataggtgttgc 34396899  T
Q  114 ataccaccattggtctcctgtgctctcccaacgtagaggaaagtaagaaggtgccatattcaaatcactgtgttgaagaaacaaagtaaagtggcttttt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34396898 ataccaccattggtctcctgtgctctcccaacgtagaggaaagtaagaaggtgccatattcaaatcactgtgttgaagaaacaaagtaaagtggcttttt 34396799  T
Q  214 agactctttcataaaaagtataaagtgaaaaatcattcaattattaggagaatat 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34396798 agactctttcataaaaagtataaagtgaaaaatcattcaattattaggagaatat 34396744  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 38831886 - 38831965
Alignment:
Q  82 ccatttgcagctgctaaatcaataggtgttgcataccaccattggtctcctgtgctctcccaacgtagaggaaagtaaga 161  Q
    |||||||| ||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||||| |||||||| |||||    
T  38831886 ccatttgctgctgctaaatcgattggtgatgcgtaccaccattgttgtcctgtgctttcccaacggagaggaaaataaga 38831965  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 7997452 - 7997501
Alignment:
Q  106 ggtgttgcataccaccattggtctcctgtgctctcccaacgtagaggaaa 155  Q
    |||| |||||||||||||||||| || || ||||||||||| ||||||||    
T  7997452 ggtgatgcataccaccattggtcaccggtactctcccaacgaagaggaaa 7997501  T

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