View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_26 (Length: 227)
Name: NF10110_1D_low_26
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 25348803 - 25348686
Alignment:
| Q |
87 |
taaatttggtatatatcgtgactcgaatcttgtatgaaggaaatgtataattgacaaaaacgcaagaattggaaacaatgtaataattgcaaataaagaa |
186 |
Q |
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| T |
25348803 |
taaatttggtatatatcgtgactcgaatcttgtatgaaggaaatatataattgacaaaaacgcaagaattggaaacaatgtaataattgcaaataaagaa |
25348704 |
T |
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| Q |
187 |
ctaagtattaatttagtt |
204 |
Q |
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| T |
25348703 |
ctaagtattaatttagtt |
25348686 |
T |
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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 45516179 - 45515981
Alignment:
| Q |
4 |
attatactaaacttggcatacatatgatattctgggttggattta-aactgtttctttctatattattgcatcnnnnnnnattttaaatttggtatatat |
102 |
Q |
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| T |
45516179 |
attatactatacttggcatacgtatgatattctgtgttggatttacaattgtttatttctctcatgttgcatcttttt---ttatagatttggtatatat |
45516083 |
T |
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| Q |
103 |
cgtgactcgaatcttgtatgaaggaaatgtataattgacaaaaacgcaagaattggaaacaatgtaataattgcaaataaagaactaagtattaatttag |
202 |
Q |
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| T |
45516082 |
catgactcgaatctcgtatgcaggaaatgtataattgacaaaaacgcaagaattggaaacaatgtaacaattgcaaacaaagaagtaagtattaattaag |
45515983 |
T |
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