View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_27 (Length: 227)
Name: NF10110_1D_low_27
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 53970423 - 53970626
Alignment:
| Q |
1 |
tctgaattacatcaaagccaatatataattccaaatctatatgacatagagttcatgtctttcaaacatcataaagtcttggtattttatatgtagaata |
100 |
Q |
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| T |
53970423 |
tctgaattacatcaaagccaatatataattccaaatctatatgacatagagttcatgtctttcaaacatcataaagtcttggtattttatatgtagaata |
53970522 |
T |
|
| Q |
101 |
taacaaaaaagccaggcatggaggaattatatacatcttagtcttcatcaatcaaatataagttcacgtccccttgggcacactgataatttctgtaaca |
200 |
Q |
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| T |
53970523 |
taacaaaaaagccaggcatggaggaattatatacatcttagtcttcatcaatcaaatataagttcacatccccttgggcacactgataatttctgtaaca |
53970622 |
T |
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| Q |
201 |
tacg |
204 |
Q |
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|||| |
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| T |
53970623 |
tacg |
53970626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 53060340 - 53060291
Alignment:
| Q |
152 |
tcaaatataagttcacgtccccttgggcacactgataatttctgtaacat |
201 |
Q |
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| T |
53060340 |
tcaaatataagtttacagccccttggacacacagataatttctgtaacat |
53060291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 53063329 - 53063273
Alignment:
| Q |
145 |
tcatcaatcaaatataagttcacgtccccttgggcacactgataatttctgtaacat |
201 |
Q |
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| T |
53063329 |
tcatcattcaaatataagtttacatccccttggatacagagataatttctgtaacat |
53063273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 44253782 - 44253727
Alignment:
| Q |
139 |
tagtcttcatcaatcaaa-tataagttcacgtccccttgggcacactgataatttc |
193 |
Q |
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|||||||||||||||||| |||||||| || |||||||||||||| ||||||||| |
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| T |
44253782 |
tagtcttcatcaatcaaaatataagtttacagccccttgggcacacagataatttc |
44253727 |
T |
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