View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_28 (Length: 226)
Name: NF10110_1D_low_28
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 44069761 - 44069962
Alignment:
| Q |
2 |
gtgcagtatcatagaaggaagaagaagaatctagggttgatagtttatttgtggtggttccgatataatggttgcacacatgagggtatggagtttgatt |
101 |
Q |
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| T |
44069761 |
gtgcaatatcatggaaggaagaagaagaatctagggttgatagtttatttgtggtggttccaatataatggttgcacacatgagggtatggagtttgatt |
44069860 |
T |
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| Q |
102 |
gcatgacaattctttgccatgcacaaacaagagacagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgc |
201 |
Q |
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| T |
44069861 |
gcatgacaattctttgccatgcacaaacaagagagagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgc |
44069960 |
T |
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| Q |
202 |
at |
203 |
Q |
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|| |
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| T |
44069961 |
at |
44069962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 44085338 - 44085143
Alignment:
| Q |
8 |
tatcatagaaggaagaagaagaatctagggttgatagtttatttgtggtggttccgatataatggttgcacacatgagggtatggagtttgattgcatga |
107 |
Q |
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| T |
44085338 |
tatcatggaaggaagaagaagaatctagggttgatagtttatttgtggtggttccaatataatggttgcacacatgagggtatggagtttgattgcatga |
44085239 |
T |
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| Q |
108 |
caattctttgccatgcacaaacaagagacagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgcat |
203 |
Q |
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| T |
44085238 |
caattctttgccatgcacaaacaagagagagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgcat |
44085143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 44095016 - 44095189
Alignment:
| Q |
8 |
tatcatagaaggaagaagaagaatctagggttgatagtttatttgtggtggttccgatataatggttgcacacatgagggtatggagtttgattgcatga |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44095016 |
tatcatggaaggaagaagaagaatctagggttgatagtttatttgtggtggttccaatataatggttgcacacatgagggtatggagtttgattgcatga |
44095115 |
T |
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| Q |
108 |
caattctttgccatgcacaaacaagagacagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttat |
181 |
Q |
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| T |
44095116 |
caattctttgccatgcacaaacaagagagagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttat |
44095189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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