View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_30 (Length: 217)
Name: NF10110_1D_low_30
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_30 |
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| [»] chr6 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 24491863 - 24491745
Alignment:
| Q |
99 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24491863 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24491764 |
T |
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| Q |
199 |
tgcttcctacagctatggt |
217 |
Q |
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||||||||||||||||||| |
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| T |
24491763 |
tgcttcctacagctatggt |
24491745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 24495421 - 24495303
Alignment:
| Q |
99 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24495421 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24495322 |
T |
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| Q |
199 |
tgcttcctacagctatggt |
217 |
Q |
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||||||||||||||||||| |
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| T |
24495321 |
tgcttcctacagctatggt |
24495303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 2810371 - 2810301
Alignment:
| Q |
147 |
tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggt |
217 |
Q |
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| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggt |
2810301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 24359176 - 24359058
Alignment:
| Q |
99 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24359176 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24359077 |
T |
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| Q |
199 |
tgcttcctacagctatggt |
217 |
Q |
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||||||||||||||||||| |
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| T |
24359076 |
tgcttcctacagctatggt |
24359058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 86922 - 86804
Alignment:
| Q |
98 |
gtataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataa |
197 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
86922 |
gtataaggaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataa |
86824 |
T |
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| Q |
198 |
ttgcttcctacagctatggt |
217 |
Q |
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|||||||||||||||||||| |
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| T |
86823 |
ttgcttcctacagctatggt |
86804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 18556573 - 18556690
Alignment:
| Q |
99 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
198 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18556573 |
tataaggaataatgatatgtatggaataatgatttt-tgctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataat |
18556671 |
T |
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| Q |
199 |
tgcttcctacagctatggt |
217 |
Q |
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|||||||| |||||||||| |
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| T |
18556672 |
tgcttcctccagctatggt |
18556690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 22684964 - 22684888
Alignment:
| Q |
22 |
aaaactgaatcccagtttaccttaaacatgcccaaaaagttatatgcatcacagatagcaatttggacaactgtaag |
98 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22684964 |
aaaattgaatcccagtttaccttaaacatgcccaaagagttatatgcatcacagatagcaatttggacaactgtaag |
22684888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 22697087 - 22697011
Alignment:
| Q |
22 |
aaaactgaatcccagtttaccttaaacatgcccaaaaagttatatgcatcacagatagcaatttggacaactgtaag |
98 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |
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| T |
22697087 |
aaaactgaatcccagtttaccttaaacatgcccaaagagttatatgcatcaaagatagcaacttggacaactgtaag |
22697011 |
T |
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