View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_31 (Length: 211)
Name: NF10110_1D_low_31
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_31 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 46549457 - 46549651
Alignment:
| Q |
17 |
ctttaatactttcttcttctttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgtagctacgaaggtactcttgatcc |
116 |
Q |
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| T |
46549457 |
ctttaatactttcttcttctttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgtagctacgaaggtactcttgatcc |
46549556 |
T |
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| Q |
117 |
ctggatgtcttctctatggagaatgttatacacaatcaaaccagaattcttaccaaatggtccagatgtttaggttcaagatacggtgttgattg |
211 |
Q |
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| T |
46549557 |
ctggctgtcttctctatggagaatgttatacacaatcaaaccagaattcttaccaaatggtccagatgtttcgattcaagatacggcgttgattg |
46549651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 1026013 - 1026207
Alignment:
| Q |
17 |
ctttaatactttcttcttctttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgtagctacgaaggtactcttgatcc |
116 |
Q |
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| T |
1026013 |
ctttaataatttcttcttctttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgtagctatgaaggtactcttgatcc |
1026112 |
T |
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| Q |
117 |
ctggatgtcttctctatggagaatgttatacacaatcaaaccagaattcttaccaaatggtccagatgtttaggttcaagatacggtgttgattg |
211 |
Q |
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| T |
1026113 |
ctggatgtcttctctatggagaattttaaacacgatcaaaccagaattcttaccaaatggtccagatgtttcgattcaagatacagtgttgattg |
1026207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 40827760 - 40827933
Alignment:
| Q |
27 |
ttcttcttctttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgtagctacgaaggtactcttgatccctggatgtct |
126 |
Q |
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| T |
40827760 |
ttcttcttctttgatattggattatagagattttatttaagggactaaagatggtataactatttgcagctatgaaggtactcttgatccttggctgtct |
40827859 |
T |
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| Q |
127 |
tctctatggagaatgttatacacaatcaaaccagaattcttaccaaatggtccagatgtttaggttcaagatac |
200 |
Q |
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| T |
40827860 |
tctctatggagaatgttaaacatgatcaaaccagaactcttacctagtggtccagatgttttgattcaagatac |
40827933 |
T |
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