View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_35 (Length: 207)
Name: NF10110_1D_low_35
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 51547581 - 51547388
Alignment:
| Q |
14 |
aagtgtaaaatgattacctaaagttgcagatctgaaggtggtccatccatcaacatcacttctattgccagtaatgacagtgagatcccttccatcacca |
113 |
Q |
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| T |
51547581 |
aagtgtaaaatgattacctaaagttgcagatctgaaggtggtccatccatcaacatcacttctattgccagtaatgacagtttgatcccttccatcacca |
51547482 |
T |
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| Q |
114 |
agtagaacaatattggttttattgcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttat |
207 |
Q |
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| T |
51547481 |
agtagaacaatattggttttattgcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttat |
51547388 |
T |
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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 19475458 - 19475293
Alignment:
| Q |
29 |
acctaaagttgcagatctgaaggtggtccatccatcaacatcacttctattgccagtaatgacagtgagatcccttccatcaccaagtagaacaatattg |
128 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||| |||||||| ||| |||||||||||||| | ||||| || |
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| T |
19475458 |
acctaaagttgcagatctgaaagtggtccatccatcaacaacacttctgttaccagtgatgacagtagaatcacttccatcaccaagcatcacaatgtta |
19475359 |
T |
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| Q |
129 |
gttttattgcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatccta |
194 |
Q |
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| T |
19475358 |
gttttataacttggtatttcaacattttcatcataatacccttctttaacataaataactatccta |
19475293 |
T |
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