View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10110_1D_low_4 (Length: 477)
Name: NF10110_1D_low_4
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 238 - 465
Target Start/End: Original strand, 37643076 - 37643303
Alignment:
| Q |
238 |
tccacaaaataaaaattcaatatagcattgttttctaagttgcctacttctccaccaacatccttttttaaaatccacaggtaaaaattgtggtatacca |
337 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37643076 |
tccataaaataaaaattcaatacagcattgttttctaagttgcctacttctccaccaacatccttttttaaaatccacaggtaaaaattgtggtatacca |
37643175 |
T |
|
| Q |
338 |
gacctgtttcctagctgacagctttcacatataaaactcttatcaatttttattttaagtggcgtaggactatagcttccatttgcatgctcaatctgac |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37643176 |
gacctgtttcctagctgacagctttcacatataaaactcttatcaatttttattttaagtggcgtaggactatagcttccatttgcatgctcaatctgac |
37643275 |
T |
|
| Q |
438 |
tgacctgccattatatactcttcgcaac |
465 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37643276 |
tgacctgccattatatactcttcgcaac |
37643303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 245
Target Start/End: Original strand, 37642822 - 37643043
Alignment:
| Q |
24 |
caatgtagtcataccttctggttctcaaatagcttttggtggtcaatgtgaaggtagtagttggtcttcgatttggcttcctattgatctaatacttgaa |
123 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37642822 |
caatgtagtcatacctgctggttctcaaatagcttttggtggtcaatgtgaaggtagtagttggtcttcgatttggcttcctattgatctaatacttgaa |
37642921 |
T |
|
| Q |
124 |
gatgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattgannnnnnnatttattttaaatcataatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37642922 |
gatgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattgatttttttatttattttaaatcataatg |
37643021 |
T |
|
| Q |
224 |
ttgggtaaggttcctccacaaa |
245 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37643022 |
ttgggtaaggttcctccacaaa |
37643043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 19826242 - 19826375
Alignment:
| Q |
99 |
gcttcctattgatctaatacttgaagatgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattgann |
198 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||||||| |||||| |||| || || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
19826242 |
gcttccaattgatcttatacttgaagatgctttggacggagggcatgtagcaactttcagcgcaattgaaatgattactggtatgaatgtatgattgatt |
19826341 |
T |
|
| Q |
199 |
nnnnnatttattttaaatcataatgttgggtaag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19826342 |
tttttatttattttaaatcataatgttgggtaag |
19826375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 6381493 - 6381664
Alignment:
| Q |
25 |
aatgtagtcataccttctggttctcaaatagcttttggtggtcaatgtgaaggtagtagttggtcttcgatttggcttcctattgatctaatacttgaag |
124 |
Q |
| |
|
||||||||||||||| ||| | | || |||||||||| |||||||||| | |||| |||||||||||| ||||||||||||||||||| || ||||||| |
|
|
| T |
6381493 |
aatgtagtcatacctgctgctgcacagatagcttttgctggtcaatgttatggtaatagttggtcttcactttggcttcctattgatcttattcttgaag |
6381592 |
T |
|
| Q |
125 |
atgctttggatggagggcacgtagcagctttaagtgctattgaaattattactggtatgaatgtatgattga |
196 |
Q |
| |
|
|||||||||| ||| || || |||||| ||| ||||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
6381593 |
atgctttggacggaaggaacatagcagattttagtgccattgaaattattactggtatgaatctatcattga |
6381664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University