View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_5 (Length: 436)
Name: NF10110_1D_low_5
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_5 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 24 - 436
Target Start/End: Complemental strand, 26609817 - 26609399
Alignment:
| Q |
24 |
acaacaatttgaaaaaatgatataactcagtgaaattgtaggtgacatgtcggtgt------tcgacaccggaacacacctaatccaagaagtgtatgtg |
117 |
Q |
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| T |
26609817 |
acaacaatttgaaaaaatgatataactcagtgtaattataggtgacatgtcggtgtcagtgttcaacactggaacacacctaatccaagaagtgtacgtg |
26609718 |
T |
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| Q |
118 |
tttcatagattttatccaattaaattagtgatggagttattgtttaggtactacttttgttaagggtaatccaatccttaacaaggaattctaatacagt |
217 |
Q |
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| T |
26609717 |
tttcattgattttatccaattaaattagtgatggagttattgtttatgtactacttttgttaagggtaatccaatccttaacaaggaattataatacagt |
26609618 |
T |
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| Q |
218 |
aggctaaaatcataaatcatctgcaaaagtgttgaatttttagcacaaacttaataaatggagtgttgggtaaaatagactttagttgtcaaagtttggg |
317 |
Q |
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| T |
26609617 |
cggctaaaatcataaatcatctgcaaaagtgttgaatttttagcacaaacctaataaatggagtgttgggtaaaatagactttagttgtcaaagtttggg |
26609518 |
T |
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| Q |
318 |
agagttaatgagttggactttagtgccaaaagcttaaggtacataatccaaaacctcaaatcaatttgaacttcacctcatcttatttgtgtatacttaa |
417 |
Q |
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| T |
26609517 |
agagttaatgagttggactttagtgccaaaagcttaaggtacataatccaaaacctcaaatcaatttgaaattcacctcatcttatttgtgtatacttaa |
26609418 |
T |
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| Q |
418 |
cttgtcctaaaactactca |
436 |
Q |
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| T |
26609417 |
cttgtcctaaaactactca |
26609399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 13436963 - 13436904
Alignment:
| Q |
71 |
tgtcggtgttcgacaccggaacacacctaatccaagaagtgtatgtgtttcatagatttta |
131 |
Q |
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| T |
13436963 |
tgtcggtgt-cgacaccgggacacgcctaatccaaggagtgtctgtgcttcatagatttta |
13436904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 14513152 - 14513108
Alignment:
| Q |
81 |
cgacaccggaacacacctaatccaagaagtgtatgtgtttcatag |
125 |
Q |
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| T |
14513152 |
cgacaccggaacacacctaatccaagaattgtctgtgattcatag |
14513108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 4673398 - 4673354
Alignment:
| Q |
81 |
cgacaccggaacacacctaatccaagaagtgtatgtgtttcatag |
125 |
Q |
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| T |
4673398 |
cgacaccggaacacgcctaatccaaggagtgtctgtgcttcatag |
4673354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 7472495 - 7472459
Alignment:
| Q |
91 |
acacacctaatccaagaagtgtatgtgtttcatagat |
127 |
Q |
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| T |
7472495 |
acacgcctaatccgagaagtgtatgtgtttcatagat |
7472459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 23705463 - 23705422
Alignment:
| Q |
82 |
gacaccggaacacacctaatccaagaagtgtatgtgtttcat |
123 |
Q |
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| T |
23705463 |
gacaccgcaacacacctaatccgagaagtgtatgtgcttcat |
23705422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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