View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_1D_low_9 (Length: 338)
Name: NF10110_1D_low_9
Description: NF10110_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_1D_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 24169786 - 24169471
Alignment:
| Q |
23 |
aaatagacaacgttgcatgttcattgttaccaccaaaaccctcagaacaacaattttgtctttcactccgcaatggtctcattctctgcaacgtcctcaa |
122 |
Q |
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| T |
24169786 |
aaatagacaacgttgcatgttcattgttaccaccaaaaccctcagaacaacaattttgtctttcactccgcaatggtctcattctctgcaacgtcctcaa |
24169687 |
T |
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| Q |
123 |
caaagtgaatcctggtgctgttgttaaagtcgtggacaatccagcacttgctgctgctgcttcagttgaaggagcagcacattctgctattcagtatttt |
222 |
Q |
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| T |
24169686 |
caaagtgaatcctggtgctgttgttaaagtcgtggacaatccagcacttgctgctgctgcttcagttgaaggagcagcacattctgctattcagtatttt |
24169587 |
T |
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| Q |
223 |
gagaatatgagaaactttctttatgctgttaaggatatgcaactcttgacttttgaagcttctgatttagagaaggtgactcaatcatttcccctatttc |
322 |
Q |
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| T |
24169586 |
gagaatatgagaaactttctttatgctgttaaggatatgcaactcttgacttttgaagcttctgatttagagaaggtgactcaatcatttcccctatttc |
24169487 |
T |
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| Q |
323 |
ttctttaattaatttg |
338 |
Q |
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| T |
24169486 |
ttctttaattaatttg |
24169471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 42238922 - 42238845
Alignment:
| Q |
88 |
ctccgcaatggtctcattctctgcaacgtcctcaacaaagtgaatcctggtgctgttgttaaagtcgtggacaatcca |
165 |
Q |
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| T |
42238922 |
ctccgcaatggcctcattctttgcaacgttctcaacaaagtcaatccgggtgctatcctcaaagtggtggacaatcca |
42238845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 42238808 - 42238714
Alignment:
| Q |
205 |
tctgctattcagtattttgagaatatgagaaactttctttatgctgttaaggatatgcaactcttgacttttgaagcttctgatttagagaaggt |
299 |
Q |
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||||| ||||||||||||||||| |||| || |||||| ||||||| | ||||||| | ||||| ||||||||||||||||| || ||||| |
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| T |
42238808 |
tctgccattcagtattttgagaacatgaagaattttcttgatgctgtcagggatatgaccttgttgacctttgaagcttctgatttggaaaaggt |
42238714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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