View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_high_10 (Length: 474)
Name: NF10110_2D_high_10
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 46632468 - 46632001
Alignment:
| Q |
1 |
atatttgaaatcctgccctgctcaaggcttattttatccttccaattctgatttatgtctttctggttttgcaaacagtcattgggctacatgtcctact |
100 |
Q |
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| T |
46632468 |
atatttgaaatccttccctgctcaaggcttattttatccttccaattctgatttatgtctttcttgttttgcaaacagtcattgggctacatgtcctact |
46632369 |
T |
|
| Q |
101 |
aggtcagttaaaggatttgcagtcgagatccagttcagaagcggaatatagagctttggctagcctcacttgtgagattcaatggttacattacattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632368 |
aggtcagttaaaggatttgcagtcgagatccagttcagaagcggaatatagagctttggctagcctcacttgtgagattcaatggttacattacattttc |
46632269 |
T |
|
| Q |
201 |
aatgatctaaacatttattttcctaagccaacttctatatattgtgctaaccaaattgtggtgtatctagctcataatcccaccttccatgagctgacaa |
300 |
Q |
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| T |
46632268 |
aatgatctaaacatttattttcctaagccaacttctatatattgtgctaaccaaattgtggtgtatctagctcataatcccaccttccatgagctgacaa |
46632169 |
T |
|
| Q |
301 |
aacacatcaaaatcgattgccacatcataagagaaaaattggaactaggaatcatcaaattatttcttacttcttctgctgccgagattactgatctgct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632168 |
aacacatcaaaatcgattgccacatcataagagaaaaattggaactaggaatcatcaaattatttcttacttcttctgctgccgagattactgatctgct |
46632069 |
T |
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| Q |
401 |
aacaaaacctctagcaaaaccagcatttctccatttgatttccaagcttggtctcattgatgtccatc |
468 |
Q |
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| T |
46632068 |
aacaaaacctctagcaaaaccagcatttctccatttgatttccaagcttggtctcatcgatgtgcatc |
46632001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 8639697 - 8639761
Alignment:
| Q |
144 |
gaatatagagctttggctagcctcacttgtgagattcaatggttacattacattttcaatgatct |
208 |
Q |
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||||| ||||| || || ||||| |||||||||||||||||| | |||||||| ||||| ||||| |
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| T |
8639697 |
gaatacagagccttagccagccttacttgtgagattcaatggcttcattacatcttcaaagatct |
8639761 |
T |
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