View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_high_11 (Length: 373)

Name: NF10110_2D_high_11
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_high_11
NF10110_2D_high_11
[»] chr3 (2 HSPs)
chr3 (18-361)||(47438608-47438954)
chr3 (295-361)||(4741576-4741643)
[»] chr4 (2 HSPs)
chr4 (75-201)||(42441122-42441248)
chr4 (254-337)||(42440983-42441068)
[»] chr2 (1 HSPs)
chr2 (293-361)||(37670695-37670764)
[»] chr1 (2 HSPs)
chr1 (260-361)||(27643355-27643457)
chr1 (260-326)||(39501118-39501184)
[»] chr8 (2 HSPs)
chr8 (260-341)||(11629493-11629574)
chr8 (269-361)||(16484140-16484233)
[»] chr7 (1 HSPs)
chr7 (258-361)||(27745716-27745820)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 47438954 - 47438608
Alignment:
Q  18 atttttccagacagctattatatatggtaaatttcgttacttactatccgctgtcagtgttttagaagctaaatctattgcttta----ctagaatctct 113  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||    
T  47438954 attttttcagacagctattatatatagtaaatttcgttacttactatccgctgtcagtgttttagaagctaaatctattgctttaattactagaatctct 47438855  T
Q  114 taatgtggcaatatcaaatgtatggcataatgtcttctttgaaagagattgtaagatcttagctgaagtcctcacttcaccaattgttcccatcaattaa 213  Q
    || ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||    
T  47438854 tagtgtggcaatatcaaatgtatggcataatgtcttgtttgaaagatattgtaagaccttagctgaagtcctcacttcaccaattggtcccaccaatgaa 47438755  T
Q  214 tttggtcaccccgttccagttgttgtagnnnnnnngactggtaattccgattttgcagtgtcgttcattaggaggtaatcaaataaagttgtttatagta 313  Q
    |||||||||| | |||||||||||||||       ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  47438754 tttggtcacctcattccagttgttgtagtttttttgactgataattccgattttgcagtgtcgttcattagaaggtaatcaaataaagttg-ttatagta 47438656  T
Q  314 ttgctagagcatctttatcccacactagtcctatattttttatgatgt 361  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47438655 ttgttagagcatctttatcccacactagtcctatattttttatgatgt 47438608  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 4741643 - 4741576
Alignment:
Q  295 aataaagttgtttatagtattgctagagcatctttatcccacactag-tcctatattttttatgatgt 361  Q
    |||||||||| | |||||||||||||||||||||||||| || ||||  || ||||||||| ||||||    
T  4741643 aataaagttgctcatagtattgctagagcatctttatccaaccctagcccccatattttttgtgatgt 4741576  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 42441248 - 42441122
Alignment:
Q  75 tgttttagaagctaaatctattgctttactagaatctcttaatgtggcaatatcaaatgtatggcataatgtcttctttgaaagagattgtaagatctta 174  Q
    |||| |||||||| || || ||||||||||||||||  | ||| |||||||||||||   |||| |||||||||| ||||||| | ||||||||| ||||    
T  42441248 tgttctagaagctgaaactgttgctttactagaatccatcaatttggcaatatcaaacagatggaataatgtcttgtttgaaacaaattgtaagacctta 42441149  T
Q  175 gctgaagtcctcacttcaccaattgtt 201  Q
    | ||||| |||| ||||| ||||||||    
T  42441148 gttgaagccctcgcttcatcaattgtt 42441122  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 42441068 - 42440983
Alignment:
Q  254 gtaattccgattttgcagtgtcg-ttcattaggaggtaat-caaataaagttgtttatagtattgctagagcatctttatcccaca 337  Q
    |||||||||| |||||||||||| |||||||||||| ||  | |||||||||| | ||| | ||||||||||||||||||| ||||    
T  42441068 gtaattccgactttgcagtgtcggttcattaggaggcaaagctaataaagttgctcatactgttgctagagcatctttatctcaca 42440983  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 37670764 - 37670695
Alignment:
Q  293 caaataaagttgtttatagtattgctagagcatctttatcccacactag-tcctatattttttatgatgt 361  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||  || ||||||||||||||||    
T  37670764 caaataaagttgttcatagtattgctagagcatctttatcccaccctagcccccatattttttatgatgt 37670695  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 361
Target Start/End: Complemental strand, 27643457 - 27643355
Alignment:
Q  260 ccgattttgcagtgtcgttcattaggaggtaatcaaataaagttgtttatagtattgctagagcatctttatcccacactagt-cctatattttttatga 358  Q
    |||| ||| ||||||||||  ||| |||| || | ||||| |||| | ||||||||||||||||||| ||||| ||| ||||| ||||| ||||| ||||    
T  27643457 ccgactttacagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatga 27643358  T
Q  359 tgt 361  Q
    |||    
T  27643357 tgt 27643355  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 39501118 - 39501184
Alignment:
Q  260 ccgattttgcagtgtcgttcattaggaggtaatcaaataaagttgtttatagtattgctagagcatc 326  Q
    |||| |||| ||||||||   |||||||| || |||||| ||||| |||||||||||||||||||||    
T  39501118 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagcatc 39501184  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 11629493 - 11629574
Alignment:
Q  260 ccgattttgcagtgtcgttcattaggaggtaatcaaataaagttgtttatagtattgctagagcatctttatcccacactag 341  Q
    |||| |||| ||||||||   |||||||| || |||||| ||||| | ||||||||||||||||||| ||||| ||| ||||    
T  11629493 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctag 11629574  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 16484233 - 16484140
Alignment:
Q  269 cagtgtcgttcattaggaggtaatcaaataaagttgtttatagtattgctagagcatctttatcccacactagt-cctatattttttatgatgt 361  Q
    ||||||||||  ||| |||| || | ||||| |||| | ||||||||||||||||||| ||||| ||| ||||| ||||| ||||| |||||||    
T  16484233 cagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatgatgt 16484140  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 27745820 - 27745716
Alignment:
Q  258 ttccgattttgcagtgtcgttcattaggaggtaatcaaataaagttgtttatagtattgctagagcatctttatcccacactag-tcctatattttttat 356  Q
    |||||| ||| ||||||||||  ||| ||||||| | ||||| |||| | ||||||| ||||||||||| ||||| ||| ||||  ||||| ||||| ||    
T  27745820 ttccgactttacagtgtcgtttgttaagaggtaagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagcccctatgtttttaat 27745721  T
Q  357 gatgt 361  Q
    |||||    
T  27745720 gatgt 27745716  T

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