View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_high_8 (Length: 600)
Name: NF10110_2D_high_8
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 52728013 - 52728597
Alignment:
| Q |
1 |
aagcaaaaattggaaaaaaggagaaaatatttgatttagggtggttgtagtttgtgtagttgtgattgaaattttgaagctt-ggggtgaatggaaggag |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52728013 |
aagcaaaaattggaaaaaaggagaaaatatttgatttagggtggttgtagtttgtgtagttgtgattgaaattttgaagcttgggggtgaatggaaggag |
52728112 |
T |
|
| Q |
100 |
ttaaaacacaagtgtggggtgatggtggttgtatttgatgttgaaaattaccaacaacagaatgtaagtgctttc--agaaacaaataaaaatcaaaata |
197 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52728113 |
ttaaaacacaagtgtggtgtgatggtggttgtatttgatgttgaaaattac---caacagaatgtaagtgctttcatagaaacaaataaaaatcaaaata |
52728209 |
T |
|
| Q |
198 |
taaacagtgagaaagaaatgaaagtctcacatgttaattacataaaggaagagaca-------atgagtcaatctatctcatatatggaacttctttatg |
290 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52728210 |
tacacagtgagaaagaaatgaaagtctcacatgttaattacataaaaggagagacaacagatgatgagtcaatctatctcatatatggaacttctttatg |
52728309 |
T |
|
| Q |
291 |
taattaataacagatgatgagttaattaacatgatggaagcataagnnnnnnnnnnnnnnnnnncccacgagaatggaagaaacaggtggtgtttccgaa |
390 |
Q |
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| T |
52728310 |
taattaataacagatgatgagttaattaacatgatggaagcataag------gagagagagagacccacgagaatggaagaaacaggtggtgtttccgaa |
52728403 |
T |
|
| Q |
391 |
ggtaagaataattccacaaatggatatccatccggctttgagattaagaccagagagactgaagattgagaacaattccactcaaaatccaatggtttac |
490 |
Q |
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| T |
52728404 |
ggtaagaataattccacaaatggatatccatccggctttgagattaagaccagagagactaaagattgagaacaattccactcaaaatccaatggtttac |
52728503 |
T |
|
| Q |
491 |
nnnnnnnnnnnnnnnnnnntagtggagaggcgggcaatagcaggttaactaacgaggtccataaattatcccttaaaattaagatccatattag |
584 |
Q |
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| T |
52728504 |
aaaaaattaaataaaaaaatagtggagaggcgggcaatagcaggttaactaatgaggtccataaatgatcctttaaaattaagatccatattag |
52728597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 45521188 - 45520946
Alignment:
| Q |
14 |
aaaaaaggagaaaatatttgatttagggtggttgtagtttgtgtagttgtgattgaaattttgaagc-ttggggtgaatggaaggagttaaaacacaagt |
112 |
Q |
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|||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||| |
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| T |
45521188 |
aaaaaaagagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatgaaaggagttaaaacacaagt |
45521089 |
T |
|
| Q |
113 |
gtggggtgatggtggttgtatttgatgttgaaaattaccaacaacagaatgtaagtgctttc--agaaacaaataaaaatcaaaatataaacagtgagaa |
210 |
Q |
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|||| || |||||||||||| |||||| | ||| ||||| ||| |||||| | ||||| | ||||||| ||||||||||||||||||||||||| | |
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| T |
45521088 |
gtggtgt-atggtggttgtagttgatgataaaagttacc--caattgaatgttaatgcttccatagaaacagataaaaatcaaaatataaacagtgacac |
45520992 |
T |
|
| Q |
211 |
agaaatgaaagtctca--catgttaattacataaaggaagagacaa |
254 |
Q |
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| T |
45520991 |
ataaatgaaagcctcacgcatgttaattacgtaaagggtgagacaa |
45520946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 45520849 - 45520793
Alignment:
| Q |
527 |
atagcaggttaactaacgaggtccataaattatcccttaaaattaagatccatatta |
583 |
Q |
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| T |
45520849 |
atagcaggtaaactaatgaggttcatcaatggtcccttaaaattaaggtccatatta |
45520793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 10566741 - 10566501
Alignment:
| Q |
14 |
aaaaaaggagaaaatatttgatttagggtggttgtagtttgtgtagttgtgattgaaattttgaagc-ttggggtgaatggaaggagttaaaacacaagt |
112 |
Q |
| |
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|||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
10566741 |
aaaaaaagagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagt |
10566642 |
T |
|
| Q |
113 |
gtggggtgatggtggttgtatttgatgttgaaaattaccaacaacagaatgtaagtgct--ttcagaaacaaataaaaatcaaaatataaacagtgagaa |
210 |
Q |
| |
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|||| || |||||||||||| |||||| | ||| ||||| |||| |||||| | |||| | |||||||||||||||||||||||||| ||| | |
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| T |
10566641 |
gtggtgt-atggtggttgtagttgatgataaaagttacc--caactgaatgttaatgcttctatagaaacaaataaaaatcaaaatataa--tttgacac |
10566547 |
T |
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| Q |
211 |
agaaatgaaagtctca--catgttaattacataaaggaagagacaa |
254 |
Q |
| |
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| T |
10566546 |
gtaaatgaaagtctcacgcatgttaattacataaagggtgagacaa |
10566501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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