View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_12 (Length: 800)
Name: NF10110_2D_low_12
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_12 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 673; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 7 - 800
Target Start/End: Original strand, 36276233 - 36277030
Alignment:
| Q |
7 |
aatgagatggacatcaattggtttaagttggatttgattaagagatcattacaattggcatcgtggaacataaaattgtggtgttgaagttgcattatta |
106 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36276233 |
aatgagattgatttcaattggtttaagttggatttgattaagagatcattacaattggcatagtggaacataaaattgtggtgttgaagttgcattatta |
36276332 |
T |
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| Q |
107 |
atatctatgacttaattctgtttcatgccaaaagattattcttatttctgaatgtttgtgnnnnnnnnnn---gagtaggcaaatgttagtaagttagtg |
203 |
Q |
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| T |
36276333 |
atatctatgacttaattctgtttcatgccaaaagattattctaattcctgaatgtttgtgtttttttttttttgagtaggcaaatgttagtaagttagtg |
36276432 |
T |
|
| Q |
204 |
gttacattagttttcagggatttcactttggactacactggtgtctgttagctcaccaaccaaactatctatgtgggacttgaatannnnnnngttgcta |
303 |
Q |
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| T |
36276433 |
gttacattagttttcagggatttcactttggactacactggtgtctgttagctcaccaaccaaactacctacgtgggacttgaatatttttttgttgcta |
36276532 |
T |
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| Q |
304 |
tataattctttcatttgatgcaggataggatatagcatgattgcagatgctgaggagaaaggactcattagaccgcaagaagttagttttccttgatatt |
403 |
Q |
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| T |
36276533 |
tataattctttcatttgatgcaggataggatatagcatgattgcagatgctgaggagaaaggactcattagaccgcaagaagttagttttccttgatatt |
36276632 |
T |
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| Q |
404 |
taattcatgatgtacatactctt-cacattgcattaaagcttccttctattactcttttgaccaactttagtagccgcattaagaataacgtcattcaat |
502 |
Q |
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| T |
36276633 |
taattcatgatgtacatactcttacacattgcattaaagcttccttctattactcttttgaccaactttagtagccgcattaagaataacgtcattcaat |
36276732 |
T |
|
| Q |
503 |
ttaaattgagagtcattatcactctcaaattttaaatcgtttacttagattggttttgtgtggtacttagaccattgatcatcaaataagagatgaattc |
602 |
Q |
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| T |
36276733 |
ttaaattgagagtcattatcactctcaaattttaaatcgtatacttagattggttttgtgtggtacttagaccattgattatcaaataagagatgaattc |
36276832 |
T |
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| Q |
603 |
acaaagttaataatttttgttgttccttttgcagagtgtcctcattgagcctactagtggaaacaccggtattggtttggcattcatggcagctgctaag |
702 |
Q |
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| T |
36276833 |
acaaggttaataatttctgttgttccttttgcagagtgtcctcattgagcctactagtggaaacaccggtattggtttggcattcatggcagctgctaag |
36276932 |
T |
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| Q |
703 |
ggttataaacttattataaccatgcctgcttcaatgagtcttgagagaagaaccattcttcgcgcatttggtgttgagttagttctcacagatccagc |
800 |
Q |
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| T |
36276933 |
ggttataaacttattataaccatgcctgcttcaatgagtcttgagagaagaaccattcttcgcgcatttggtgctgagttagttctcacagatccagc |
36277030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 635 - 797
Target Start/End: Complemental strand, 46937499 - 46937337
Alignment:
| Q |
635 |
agagtgtcctcattgagcctactagtggaaacaccggtattggtttggcattcatggcagctgctaagggttataaacttattataaccatgcctgcttc |
734 |
Q |
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| T |
46937499 |
agagtgtcctcattgagccaacaagtggcaatacgggcatcggattggccttcttggcagcagccaaaggctacaagcttatcattacaatgcctgcttc |
46937400 |
T |
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| Q |
735 |
aatgagtcttgagagaagaaccattcttcgcgcatttggtgttgagttagttctcacagatcc |
797 |
Q |
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| T |
46937399 |
gatgagtcttgaaagaagaaccattcttctatcttttggagctgagttggttctgacagatcc |
46937337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 3523120 - 3523156
Alignment:
| Q |
180 |
taggcaaatgttagtaagttagtggttacattagttt |
216 |
Q |
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| T |
3523120 |
taggcaaatcttagtaagttagtggttacattagttt |
3523156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 635 - 761
Target Start/End: Original strand, 862209 - 862335
Alignment:
| Q |
635 |
agagtgtcctcattgagcctactagtggaaacaccggtattggtttggcattcatggcagctgctaagggttataaacttattataaccatgcctgcttc |
734 |
Q |
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| T |
862209 |
agagtgtcctcattgaaccaacaagtggtaatactggcattggattagccttcatggcagcggccaagggatacaagctcataattaccatgcctgcttc |
862308 |
T |
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| Q |
735 |
aatgagtcttgagagaagaaccattct |
761 |
Q |
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| T |
862309 |
aatgagtcttgaaagaagaatcattct |
862335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 741
Target Start/End: Complemental strand, 34367227 - 34367138
Alignment:
| Q |
652 |
cctactagtggaaacaccggtattggtttggcattcatggcagctgctaagggttataaacttattataaccatgcctgcttcaatgagt |
741 |
Q |
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| T |
34367227 |
cctactagtgggaacacaggaattggtcttgcctttatagcagcttctaaaggttataaactcattttaacaatgcctgcttccatgagt |
34367138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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