View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_13 (Length: 791)
Name: NF10110_2D_low_13
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 722; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 1 - 771
Target Start/End: Original strand, 7385015 - 7385787
Alignment:
| Q |
1 |
actaaacatagaatacgggaaatgcttaaaaccacaataagaacgaaacaatgtttaaaatacgaaaaatgctaacttggttatgattactatgcattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7385015 |
actaaacatagaatacgggaaatgcttaaaaccacaataagaacgaaacaatgattaaaatacggaaaatgctaacttggttatgattactatgcattaa |
7385114 |
T |
|
| Q |
101 |
aatgaaacaatgcttaacccctatggttatgattactatgcatccttcactcatcgtaatcaagttttttcattctatcaactcaaattaccaatgttaa |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7385115 |
aatgaaacgatgcttaacccctatggttatgattactatgcatccgtcactcatggtaatcaagttttttcattctatcaactcaaattaccaatgttaa |
7385214 |
T |
|
| Q |
201 |
aatcaatttattctgcattttgttggactctatcaaacttctcaacatgatcattttgagtgtttatgtgttgtttatccggtatgagttaaaactttca |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7385215 |
aatcaatttattctgcattttgttggactctatcaaacttctcaacatgatcattttgagtgtttatgtgttgtttatccggtatgagttaaaactttca |
7385314 |
T |
|
| Q |
301 |
cattgcttggaaaaatgaagattgcacaatatataagtgagatgatccactaacaaaaatgccttagaatttaggtaaaattgtggtatccaactcgctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7385315 |
cattgcttggaaaaatgaagattgcacaatatataagtgagatgatccactaacaaaaatgccttagaatttaggtaaaattgtggtatccaactcgctt |
7385414 |
T |
|
| Q |
401 |
gtgtgttgctcttgccctatgtggatgattcttcagactccctttgtgacccaacaataatattagagtcgatgattcaacaattgttcaatcaagtatt |
500 |
Q |
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| T |
7385415 |
gtgtgttgctcttgccctatgtggatgattcttcagactccctttgtgacccaacaataatattagagtcgatgattcgacaattgttcgatcaactatt |
7385514 |
T |
|
| Q |
501 |
tgtgttgaaagtcttcctgacaatgatggctagacagacagttccgttggcgtagcaacgatgagtcaatgacaatgcaaggacaaatgtttatggatga |
600 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7385515 |
tgtgttgaaagtcttcctgacaatgatggctcgacagacagttccgttggcgtagcaacgatgagtcaatgacaatgcaaggacaaatgtttatggatga |
7385614 |
T |
|
| Q |
601 |
aacaacttgacgagtaacataataaattgataaattcacacttaaaaggggagattgttacttagaaagtgtgagttagaattctcacattgcttagaaa |
700 |
Q |
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| T |
7385615 |
aacaacttgacgagtagcataataaattgataaattcacacttaaaaggggagattgttacttagaaagtgtgagttagaattctcacattgcttagaaa |
7385714 |
T |
|
| Q |
701 |
gtgaagatcgaaca--atatataagtaagaagtctcataaactctaaagtatttagattttaggtaaagatgt |
771 |
Q |
| |
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| T |
7385715 |
gtgaagatcgaacaatatatataagtaagaagtctcataaactctaaagtatttagattttaggtaaagatgt |
7385787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 7385010 - 7384963
Alignment:
| Q |
29 |
aaaccacaataagaacgaaacaatgtttaaaatacgaaaaatgctaac |
76 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
7385010 |
aaaccacaataagaacgaaacaatgtttaaaatacgggaaatgctaac |
7384963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 700
Target Start/End: Complemental strand, 7147794 - 7147761
Alignment:
| Q |
667 |
aagtgtgagttagaattctcacattgcttagaaa |
700 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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| T |
7147794 |
aagtgtgagttagaagtctcacattgcttagaaa |
7147761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 700
Target Start/End: Complemental strand, 25390070 - 25390017
Alignment:
| Q |
647 |
aggggagattgttacttagaaagtgtgagttagaattctcacattgcttagaaa |
700 |
Q |
| |
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||||||||||||| ||| |||| |||||||||| |||||||||||||||||| |
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| T |
25390070 |
aggggagattgttgtgtagcaagtttgagttagaaatctcacattgcttagaaa |
25390017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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