View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_14 (Length: 724)
Name: NF10110_2D_low_14
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 126 - 697
Target Start/End: Complemental strand, 14380348 - 14379777
Alignment:
| Q |
126 |
tccatcgtgttttggaaattcatatattttaggatacatttgaattgcttacatagggcggaatgtagtaaaatgaaatggaataggttttttagatttg |
225 |
Q |
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| T |
14380348 |
tccatcgtgttttggaaattcatgtattttaggatacatttgaattgcttacatagggcggaatgtagtagaatgaaatggaataggttttttagatttg |
14380249 |
T |
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| Q |
226 |
taaaagggatattatctcatttcatttcattggttcaatactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaa |
325 |
Q |
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||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14380248 |
taaaagggatattatctcatttcatttcactggttccacactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaa |
14380149 |
T |
|
| Q |
326 |
ttgttaacccttgcttaggaaaatatattagttatttatctctgattgcagtggttttttgcagcatcgtttactcactacctcttgctagagcttaatt |
425 |
Q |
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| T |
14380148 |
ttgttaacccttgcttaggaaaatatattagttatttatctctgattgcagtggttttttgcagcatcgtttactcactacctcttgctagagcttaatt |
14380049 |
T |
|
| Q |
426 |
gtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgggttttcttactcaccttgactacaacaattatgaggtttg |
525 |
Q |
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| T |
14380048 |
gtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgagttttcttactcaccttgactacaacaattatgaggtttg |
14379949 |
T |
|
| Q |
526 |
cgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatgtaggttgattttatttct |
625 |
Q |
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| T |
14379948 |
cgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatataggttgattttatttct |
14379849 |
T |
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| Q |
626 |
cgcatccgaagtttgttgagttgtaaatttaccaaaactctaattagtagaagttcgtcaaatagttgctgc |
697 |
Q |
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| T |
14379848 |
cgcatccgaagtttgttgagttgtaaattgaccaaaactctaattagtagaagttggtcaaatagttgctgc |
14379777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 396 - 694
Target Start/End: Original strand, 14246164 - 14246463
Alignment:
| Q |
396 |
ttactcactacctcttgctagagcttaattgtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgggttttcttac |
495 |
Q |
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||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
14246164 |
ttactcattacctctcgccagagctcaattgtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacccgtaatgggttgagttttcttac |
14246263 |
T |
|
| Q |
496 |
tcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtca |
595 |
Q |
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| T |
14246264 |
tcaccttgaatacgacaattacgatgtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtca |
14246363 |
T |
|
| Q |
596 |
tgtttggttatgtaggttgattttatttctcgcat-ccgaagtttgttgagttgtaaatttaccaaaactctaattagtagaagttcgtcaaatagttgc |
694 |
Q |
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||||||||||||| ||||||| ||||| ||| | || | || | |||| |||||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
14246364 |
tgtttggttatgtgagttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaatagttgc |
14246463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 14393300 - 14393194
Alignment:
| Q |
20 |
gaaatataccttcagcttcacttccaaaatctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattcc |
119 |
Q |
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| T |
14393300 |
gaaatataccttcagcttcacttccaaaatctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattcc |
14393201 |
T |
|
| Q |
120 |
atctcct |
126 |
Q |
| |
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||||||| |
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| T |
14393200 |
atctcct |
14393194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 196 - 390
Target Start/End: Original strand, 14245927 - 14246122
Alignment:
| Q |
196 |
aaatgaaatggaataggttttttagatttgtaaaagggatattatctcatttcatttcattggttcaatactataccatcaatttgaacatactctcgag |
295 |
Q |
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||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||| | || | |||||||||||| ||| |||||||||| ||| |
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| T |
14245927 |
aaatgaaatggaatatgttttttagatttgaaaaatggatattatctcacttcatttcactaatttcacactataccatcagtttaaacatactcttgag |
14246026 |
T |
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| Q |
296 |
tcttagctaatgggctgtgattttacacaattgttaacccttgcttaggaaaat-atatt-agttatttatctctgattgcagtggttttttgcagc |
390 |
Q |
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| T |
14246027 |
tctt-gataatgggttgtgagattacacaattattagcccttgcttaggaaaataatattgagttatttgtctctgattccggcggttttttgcagc |
14246122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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