View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_low_19 (Length: 663)

Name: NF10110_2D_low_19
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_low_19
NF10110_2D_low_19
[»] chr1 (33 HSPs)
chr1 (19-637)||(2069568-2070183)
chr1 (19-637)||(2073914-2074529)
chr1 (436-542)||(17745219-17745325)
chr1 (436-550)||(40257398-40257513)
chr1 (439-550)||(51814493-51814605)
chr1 (436-536)||(28411343-28411444)
chr1 (436-549)||(10526823-10526937)
chr1 (436-549)||(11068805-11068919)
chr1 (436-552)||(6122791-6122908)
chr1 (457-549)||(9165178-9165271)
chr1 (436-548)||(44126396-44126509)
chr1 (436-550)||(41508830-41508945)
chr1 (493-550)||(8177201-8177259)
chr1 (457-550)||(8904413-8904507)
chr1 (484-549)||(19528337-19528403)
chr1 (436-549)||(31794226-31794340)
chr1 (436-549)||(52116743-52116857)
chr1 (436-532)||(12587287-12587383)
chr1 (486-550)||(25297771-25297836)
chr1 (442-549)||(42787208-42787316)
chr1 (436-549)||(50901581-50901695)
chr1 (436-549)||(1094525-1094639)
chr1 (436-506)||(6948039-6948109)
chr1 (484-549)||(9117119-9117185)
chr1 (436-549)||(16893394-16893508)
chr1 (496-549)||(19480527-19480581)
chr1 (458-547)||(33700757-33700847)
chr1 (484-549)||(47753714-47753780)
chr1 (458-550)||(6650594-6650687)
chr1 (508-549)||(16170013-16170054)
chr1 (516-549)||(38978985-38979018)
chr1 (508-549)||(42983409-42983450)
chr1 (493-549)||(51703779-51703836)
[»] chr5 (19 HSPs)
chr5 (436-549)||(14495767-14495881)
chr5 (436-549)||(29075781-29075895)
chr5 (436-549)||(16773807-16773921)
chr5 (484-551)||(29692396-29692464)
chr5 (484-542)||(1410669-1410728)
chr5 (436-538)||(21086725-21086828)
chr5 (436-549)||(16457810-16457924)
chr5 (436-542)||(19949578-19949684)
chr5 (436-549)||(21589288-21589402)
chr5 (483-542)||(16436625-16436684)
chr5 (436-475)||(27840981-27841020)
chr5 (436-538)||(43442207-43442310)
chr5 (484-549)||(5390862-5390926)
chr5 (457-549)||(25627057-25627150)
chr5 (443-476)||(31306837-31306870)
chr5 (436-549)||(43230736-43230852)
chr5 (513-549)||(892514-892550)
chr5 (486-549)||(6844729-6844793)
chr5 (494-549)||(21549157-21549213)
[»] chr3 (26 HSPs)
chr3 (436-545)||(4844473-4844583)
chr3 (436-545)||(4870169-4870279)
chr3 (436-550)||(10499071-10499186)
chr3 (436-542)||(13808847-13808954)
chr3 (436-545)||(2667866-2667976)
chr3 (439-526)||(28531023-28531111)
chr3 (458-549)||(14186648-14186739)
chr3 (436-541)||(51903840-51903946)
chr3 (494-550)||(5499427-5499484)
chr3 (508-549)||(16991542-16991583)
chr3 (486-550)||(31520617-31520682)
chr3 (436-544)||(38550366-38550475)
chr3 (484-550)||(8051213-8051280)
chr3 (436-550)||(36720380-36720495)
chr3 (436-549)||(4222141-4222255)
chr3 (436-549)||(10445101-10445216)
chr3 (491-549)||(31788987-31789046)
chr3 (511-549)||(203090-203128)
chr3 (493-550)||(7975417-7975475)
chr3 (484-549)||(14339610-14339676)
chr3 (484-549)||(21960551-21960617)
chr3 (496-549)||(42430335-42430388)
chr3 (493-550)||(46518627-46518685)
chr3 (494-541)||(11612307-11612355)
chr3 (513-545)||(17554454-17554486)
chr3 (443-538)||(32651407-32651503)
[»] chr8 (25 HSPs)
chr8 (442-549)||(23361617-23361725)
chr8 (436-550)||(4830486-4830601)
chr8 (436-550)||(8484998-8485113)
chr8 (436-549)||(20994419-20994534)
chr8 (436-549)||(968362-968476)
chr8 (436-506)||(14701379-14701449)
chr8 (439-547)||(2203494-2203603)
chr8 (493-549)||(32157191-32157248)
chr8 (484-550)||(16852339-16852406)
chr8 (436-550)||(28783059-28783174)
chr8 (436-533)||(7140725-7140822)
chr8 (436-549)||(8059632-8059746)
chr8 (436-549)||(11819776-11819890)
chr8 (436-549)||(26688865-26688979)
chr8 (436-549)||(27750730-27750844)
chr8 (458-546)||(35690048-35690137)
chr8 (484-550)||(5801046-5801113)
chr8 (484-550)||(19703497-19703564)
chr8 (436-529)||(6536540-6536634)
chr8 (436-506)||(24351690-24351760)
chr8 (436-549)||(30483846-30483960)
chr8 (436-506)||(33727835-33727905)
chr8 (484-548)||(29858059-29858124)
chr8 (513-553)||(22268973-22269013)
chr8 (436-480)||(43292398-43292442)
[»] chr2 (19 HSPs)
chr2 (436-550)||(25931005-25931120)
chr2 (436-551)||(37480073-37480189)
chr2 (484-550)||(39714991-39715058)
chr2 (436-550)||(21195638-21195753)
chr2 (484-550)||(34041598-34041665)
chr2 (443-549)||(41202250-41202357)
chr2 (436-549)||(1435064-1435177)
chr2 (483-552)||(29197385-29197455)
chr2 (436-549)||(42327357-42327471)
chr2 (436-550)||(23230567-23230681)
chr2 (494-542)||(3001386-3001435)
chr2 (493-549)||(4438998-4439055)
chr2 (437-549)||(19244109-19244222)
chr2 (436-548)||(37755933-37756046)
chr2 (491-550)||(7799052-7799112)
chr2 (436-472)||(11127965-11128001)
chr2 (493-548)||(16918597-16918653)
chr2 (494-549)||(18259730-18259786)
chr2 (513-549)||(32106566-32106602)
[»] scaffold0118 (1 HSPs)
scaffold0118 (436-549)||(41595-41709)
[»] chr7 (25 HSPs)
chr7 (436-549)||(15137553-15137667)
chr7 (508-551)||(35119381-35119424)
chr7 (484-550)||(45709718-45709785)
chr7 (436-542)||(41519227-41519333)
chr7 (436-542)||(43663057-43663164)
chr7 (484-549)||(22760863-22760929)
chr7 (484-549)||(23301612-23301678)
chr7 (436-549)||(26459372-26459486)
chr7 (484-549)||(48771938-48772004)
chr7 (482-549)||(25021343-25021411)
chr7 (510-549)||(4161288-4161327)
chr7 (436-546)||(7721372-7721483)
chr7 (484-550)||(23552117-23552184)
chr7 (436-475)||(24438209-24438248)
chr7 (496-549)||(7801180-7801234)
chr7 (436-549)||(20335793-20335907)
chr7 (493-542)||(23595736-23595786)
chr7 (436-549)||(25590611-25590725)
chr7 (496-549)||(25956314-25956368)
chr7 (493-550)||(26526289-26526347)
chr7 (484-549)||(43590907-43590973)
chr7 (513-550)||(41487361-41487398)
chr7 (484-547)||(21854550-21854614)
chr7 (436-523)||(42262057-42262145)
chr7 (436-480)||(48582799-48582843)
[»] chr4 (15 HSPs)
chr4 (436-549)||(28635696-28635810)
chr4 (436-549)||(13496241-13496355)
chr4 (436-550)||(7949416-7949531)
chr4 (436-550)||(51250484-51250599)
chr4 (484-549)||(47044717-47044783)
chr4 (436-549)||(51948480-51948594)
chr4 (486-549)||(9241037-9241101)
chr4 (439-549)||(19229173-19229283)
chr4 (485-549)||(19238588-19238653)
chr4 (457-549)||(37109334-37109427)
chr4 (484-542)||(21660154-21660213)
chr4 (484-542)||(21668918-21668977)
chr4 (508-551)||(27965545-27965588)
chr4 (439-549)||(55427165-55427276)
chr4 (442-549)||(46545711-46545819)
[»] chr6 (17 HSPs)
chr6 (491-549)||(24641207-24641266)
chr6 (436-550)||(31622953-31623068)
chr6 (436-550)||(33549103-33549218)
chr6 (453-542)||(6776586-6776676)
chr6 (436-550)||(12234469-12234584)
chr6 (436-548)||(6758384-6758497)
chr6 (443-538)||(28363948-28364044)
chr6 (493-551)||(12188322-12188381)
chr6 (508-547)||(32613175-32613214)
chr6 (483-529)||(346551-346597)
chr6 (484-549)||(21418470-21418536)
chr6 (484-549)||(30127400-30127466)
chr6 (436-469)||(31282523-31282556)
chr6 (513-542)||(34444810-34444839)
chr6 (513-549)||(28028530-28028566)
chr6 (494-549)||(32201905-32201961)
chr6 (510-542)||(33931982-33932014)
[»] scaffold0299 (1 HSPs)
scaffold0299 (454-542)||(11535-11624)
[»] scaffold0258 (1 HSPs)
scaffold0258 (436-549)||(15285-15399)
[»] scaffold0187 (2 HSPs)
scaffold0187 (516-549)||(12465-12498)
scaffold0187 (516-549)||(22793-22826)
[»] scaffold1367 (1 HSPs)
scaffold1367 (484-542)||(850-909)
[»] scaffold0126 (1 HSPs)
scaffold0126 (436-473)||(25309-25346)
[»] scaffold0070 (1 HSPs)
scaffold0070 (508-549)||(42555-42596)
[»] scaffold0417 (1 HSPs)
scaffold0417 (508-552)||(10216-10260)


Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 637
Target Start/End: Complemental strand, 2070183 - 2069568
Alignment:
Q  19 gcaatttggtttgaaggggctggtggcggcgcctgtgagga-ggggaaaaagctgcgctgcaattcttctacaagcgactttgcatacttcgatacaaac 117  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2070183 gcaatttggattgaaggggctggtggcggcgcttgtgaggaaggggaaaaagctgcgctgcaattcttctacaagcgactttgcatacttcgatacaaac 2070084  T
Q  118 tcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaacattaatcttgttatannnnnnnngaaggatgtgttcatct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||        |||||||||||||||||    
T  2070083 tcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaa-----atcttgttatattttttttgaaggatgtgttcatct 2069989  T
Q  218 cactcattataagtgtctcatttgtattgtttttctgtttcaaattaattttcactttgaaatatcaattatgtatattaattatttttctattaatact 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2069988 cactcattataagtgtctcatttgtattgtttttctgtttcaaattaattttcactttgaaatatcaattatgtgtattaattatttttctattaatact 2069889  T
Q  318 cgtttatttactcattagtgagggcacttccaaacaacaaacaattaagttaacatcgtctgaatcagtgactgagcaccctacaaagcaacttatggtg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2069888 cgtttatttactcattagtgagggcacttccaaacaacaaacaactaagttaacatcgtctgaatcagtgactgagcaccctacaaagcaacttatggtg 2069789  T
Q  418 gttgaaaatg-nnnnnnnnaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatccc 516  Q
    ||||||||||         ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||    
T  2069788 gttgaaaatgtttttttttaagaagctaaattagctcatccaaattgacaccagagggatttgaatatgagacttcgaggaggagcacatgccagatccc 2069689  T
Q  517 aagtcaataccaccaggccaacccaaatgggtttggtggttgaaagtgttaaagacacatttgcagttacagataaggttgacacttctttctatatggt 616  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  2069688 aagtcaatacaaccaggccaacccaaatgggtgtggtggttgaaagtgttaaagacacatttgcaattacagataaggttgacacttctttctgtatggt 2069589  T
Q  617 tttgcacaatgtgacagataa 637  Q
    |||||||||||||||||||||    
T  2069588 tttgcacaatgtgacagataa 2069568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 637
Target Start/End: Complemental strand, 2074529 - 2073914
Alignment:
Q  19 gcaatttggtttgaaggggctggtggcggcgcctgtgagga-ggggaaaaagctgcgctgcaattcttctacaagcgactttgcatacttcgatacaaac 117  Q
    ||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2074529 gcaatttggattgaaggggctggtggcggcgctggtgaggaaggggaaaaagctgcgctgcaattcttctacaagcgactttgcatacttcgatacaaac 2074430  T
Q  118 tcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaacattaatcttgttatannnnnnnngaaggatgtgttcatct 217  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||        |||||||||||||||||    
T  2074429 tcatcaaataagggaataattgaatttgattctctgttaactgtcaaagttttctctaa-----atcttgttatattttttttgaaggatgtgttcatct 2074335  T
Q  218 cactcattataagtgtctcatttgtattgtttttctgtttcaaattaattttcactttgaaatatcaattatgtatattaattatttttctattaatact 317  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2074334 cactcattataagtgtctcatttgtattgtttttccgtttcaaattaattttcactttgaaatatcaattatgtgtattaattatttttctattaatact 2074235  T
Q  318 cgtttatttactcattagtgagggcacttccaaacaacaaacaattaagttaacatcgtctgaatcagtgactgagcaccctacaaagcaacttatggtg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2074234 cgtttatttactcattagtgagggcacttccaaacaacaaacaattaagttaacatcgtctgaatcagtgactgagcaccctacaaagcaacttatggtg 2074135  T
Q  418 gttgaaaatg-nnnnnnnnaagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatccc 516  Q
    ||||||||||         ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||    
T  2074134 gttgaaaatgtttttttttaagaagctaaattagctcatccaaattgacaccagagggatttgaatatgagacttcgaggaggagcacacgctagatccc 2074035  T
Q  517 aagtcaataccaccaggccaacccaaatgggtttggtggttgaaagtgttaaagacacatttgcagttacagataaggttgacacttctttctatatggt 616  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2074034 aagtcaatacaaccaggccaacccaaatgggtttggtggttgaaagtgttaaagacacatttgcagttacagataaggttgacacttctttctgtatggt 2073935  T
Q  617 tttgcacaatgtgacagataa 637  Q
    |||||||||||||||||||||    
T  2073934 tttgcacaatgtgacagataa 2073914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 17745219 - 17745325
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||| | || | |||||||||||||||||| | ||  ||||||| |||||||||||||||||| ||| ||||||| ||||||||| ||||    
T  17745219 aagaagctaaattaac-cacctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggc 17745317  T
Q  535 caacccaa 542  Q
    ||||||||    
T  17745318 caacccaa 17745325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 40257513 - 40257398
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    ||||||||||| |||| || ||||||||||||| || ||| ||||   |||||| ||||||||||||||||  |||| || |||| ||||||||||||||    
T  40257513 aagaagctaaactagcccacccaaattgacaccggatagaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggc 40257414  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  40257413 caacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 439 - 550
Target Start/End: Complemental strand, 51814605 - 51814493
Alignment:
Q  439 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaa 537  Q
    ||||||||||||| || |||||||| |||| |||||| | ||   |||||| | |||||||||||||| | |||||| ||||||||||||| ||||||||    
T  51814605 aagctaaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaa 51814506  T
Q  538 cccaaatgggttt 550  Q
    ||||| |||||||    
T  51814505 cccaagtgggttt 51814493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 536
Target Start/End: Complemental strand, 28411444 - 28411343
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    |||||| ||||| |||||||  |||||| ||||||||||| |||| | |||||| || | ||||||||||| | || |||||||||||||||||||||||    
T  28411444 aagaagttaaatgagctcatttaaattggcaccagagagaattgaatctgagacctcaaagaggagcacactctcatatcccaagtcaataccaccaggc 28411345  T
Q  535 ca 536  Q
    ||    
T  28411344 ca 28411343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 10526937 - 10526823
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||| | || |||||||||| ||||||||| | || | |||||| | ||||||||||| ||  |||| ||||||| |||||||||  | |    
T  10526937 aagaagctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaataccactggac 10526838  T
Q  535 caacccaaatgggtt 549  Q
    |||||||||||||||    
T  10526837 caacccaaatgggtt 10526823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 11068805 - 11068919
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccag-atcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| |||  ||||||||||  |||||| |||| | ||||   || | ||||||||||| || | |||||||||||||||||||||      
T  11068805 aagaagctaaattagcccatttaaattgacactggagagaattgaatctgaggtctcaaagaggagcacactcctggatcccaagtcaataccaccagat 11068904  T
Q  535 caacccaaatgggtt 549  Q
    |||||||||||||||    
T  11068905 caacccaaatgggtt 11068919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 552
Target Start/End: Complemental strand, 6122908 - 6122791
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || |||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  ||||||| | ||||||| |||     
T  6122908 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactaggg 6122809  T
Q  535 caacccaaatgggtttgg 552  Q
    ||||||||||||||||||    
T  6122808 caacccaaatgggtttgg 6122791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 549
Target Start/End: Original strand, 9165178 - 9165271
Alignment:
Q  457 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||| ||||||||||| ||||   |||||| | |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  9165178 caaattggcaccagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 548
Target Start/End: Complemental strand, 44126509 - 44126396
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    ||||||||||||||||  | | |||||| ||| ||||||| |  | | |||||| ||| |||||||||||| || || ||||| ||||||||||||||||    
T  44126509 aagaagctaaattagcctacctaaattggcactagagagaatcaaatctgagacctcgtggaggagcacactcccaggtcccaggtcaataccaccaggc 44126410  T
Q  535 caacccaaatgggt 548  Q
    |||||||| |||||    
T  44126409 caacccaagtgggt 44126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 41508945 - 41508830
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||  ||| |||||||| ||  || || | | |||||| | |||||||||||||| || |||||||||  || |||||||||||    
T  41508945 aagaagctaaattagcccactcaagttgacaccggatggaattaaatctgagaccttgaggaggagcacactcccagatcccaaaccagtaccaccaggc 41508846  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  41508845 caacccaagtgggttt 41508830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 8177201 - 8177259
Alignment:
Q  493 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||||||||||| || |||||||||| ||||||||| |||||||| |||||||||||    
T  8177201 gaggaggagcacactcccagatcccaagccaataccactaggccaactcaaatgggttt 8177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 550
Target Start/End: Complemental strand, 8904507 - 8904413
Alignment:
Q  457 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    ||||||| ||||||||||| | ||   |||||| | |||||||||||||| | || ||||||||||||||| || |||||||||||| |||||||    
T  8904507 caaattggcaccagagagaatcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaatactactaggccaacccaagtgggttt 8904413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 19528337 - 19528403
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| | |||||||||||||| |  |||||||||| |||||||||||||||||||||| ||||||    
T  19528337 tgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 31794226 - 31794340
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || ||||||||||||||||| || | ||     |||| | ||||||||||||||  |||  ||||||| ||||||||| ||||    
T  31794226 aagaagctaaattagcccacccaaattgacaccagagggaatcgaactctagaccttgaggaggagcacactcccaagtcccaagccaataccactaggc 31794325  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  31794326 caacccaagtgggtt 31794340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 52116743 - 52116857
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || |  ||||| ||| || |||| ||||   |||||| | |||||||||||||| ||  | ||||||| ||||||||||||||    
T  52116743 aagaagctaaattagcccaccttaattggcactagggagaattgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggc 52116842  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  52116843 caacccaactgggtt 52116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 532
Target Start/End: Complemental strand, 12587383 - 12587287
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccag 532  Q
    |||||||||||||||| || | |||||| |||| |||||| | ||   |||||| |||||||||||||||| | ||||||||||||||||| ||||||    
T  12587383 aagaagctaaattagcccacctaaattg-caccggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaatatcaccag 12587287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 25297836 - 25297771
Alignment:
Q  486 agacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||| |||||||||||||||| | ||||||| ||||||||||||| || ||||||||| |||||||    
T  25297836 agacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggttt 25297771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 549
Target Start/End: Complemental strand, 42787316 - 42787208
Alignment:
Q  442 ctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaaccc 540  Q
    |||||||| ||||| ||||||||||| ||||||| | || | |||||| | |||||||| | ||| | ||  ||||||||||||||||| |||||||||     
T  42787316 ctaaattaactcattcaaattgacactagagagactcgaatctgagactttgaggaggaacgcactctcaagtcccaagtcaataccactaggccaacct 42787217  T
Q  541 aaatgggtt 549  Q
    || ||||||    
T  42787216 aactgggtt 42787208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 50901695 - 50901581
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaa-taccaccagg 533  Q
    |||||||||||||||| || | |||||| |||  |||||| | || | |||||| ||||||||||||||||  |||| ||||||| ||| |||||| |||    
T  50901695 aagaagctaaattagcccacctaaattggcact-gagagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaattaccactagg 50901597  T
Q  534 ccaacccaaatgggtt 549  Q
    ||||||||| ||||||    
T  50901596 ccaacccaagtgggtt 50901581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 1094639 - 1094525
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    |||||| ||||||||| || | |||||| |||| |||||| | || | |||||| ||| |||||||||||| | ||| | |||||||||||||| ||  |    
T  1094639 aagaagttaaattagcccacctaaattggcaccggagagaatcgaatttgagacctcgtggaggagcacactcacaggttccaagtcaataccaacaaac 1094540  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  1094539 caacccaagtgggtt 1094525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 6948039 - 6948109
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 506  Q
    |||||| ||||||| |||||| ||||||||||| | |||| ||||  ||||||| |||||||| |||||||    
T  6948039 aagaagttaaattaactcatctaaattgacaccggtgagaattgaacatgagacctcgaggagcagcacac 6948109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 9117185 - 9117119
Alignment:
Q  484 tgagacgtcgaggaggagcacacg-ccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| || |||||||||||||  |||||||||||| | |||||| | ||||||||||||||||||    
T  9117185 tgagacctcaaggaggagcacacttccagatcccaagcccataccaaccggccaacccaaatgggtt 9117119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 16893508 - 16893394
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||  |||||||||||| |||| | | ||   |||||| ||||||||||| ||||  ||| ||| |||| |||||||| ||||     
T  16893508 aagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaataccaacaggt 16893409  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  16893408 caacccaagtgggtt 16893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 19480581 - 19480527
Alignment:
Q  496 gaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| ||| ||||||||||||| ||||  |||||||||||||||||||    
T  19480581 gaggagcacactccaagatcccaagtcaacaccataaggccaacccaaatgggtt 19480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 547
Target Start/End: Original strand, 33700757 - 33700847
Alignment:
Q  458 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatggg 547  Q
    |||||| ||||||||||| | ||   |||||| | |||||||||||||| || |||| ||||| ||||||||| |||||||||||| ||||    
T  33700757 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 47753780 - 47753714
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| | |||||||||||||  || ||||||||||||||||| |||||| ||||| |||||||||    
T  47753780 tgagaccttgaggaggagcacagtcctagatcccaagtcaatacgaccaggtcaacctaaatgggtt 47753714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 550
Target Start/End: Complemental strand, 6650687 - 6650594
Alignment:
Q  458 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||||||||||||||| | ||   |||||| | ||||||||||| ||  || ||||||||| ||||||||| ||||||||| || |||||||    
T  6650687 aaattgacaccagagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaataccactaggccaacctaattgggttt 6650594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 549
Target Start/End: Original strand, 16170013 - 16170054
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  16170013 ccaggtcccaagtcaataccaccaggctaacccaagtgggtt 16170054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 549
Target Start/End: Original strand, 38978985 - 38979018
Alignment:
Q  516 caagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||||||||| |||||||||||||||||||    
T  38978985 caagtcaataccactaggccaacccaaatgggtt 38979018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 549
Target Start/End: Original strand, 42983409 - 42983450
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||| |||||||||||||||| |||||||||||| ||||    
T  42983409 ccagatctcaagtcaataccaccatgccaacccaaataggtt 42983450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 549
Target Start/End: Complemental strand, 51703836 - 51703779
Alignment:
Q  493 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||||||||| || |||| ||||| ||||||||| || ||||||||||||||||    
T  51703836 gaggaggagcacactcccagattccaagccaataccactagaccaacccaaatgggtt 51703779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 14495767 - 14495881
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    ||||||||||| |||| |||| |||||| || | |||||| |  | | |||||| |||||||||||||||| || ||||||||||||||||||||||| |    
T  14495767 aagaagctaaactagcccatctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 14495866  T
Q  535 caacccaaatgggtt 549  Q
    |||||||||||||||    
T  14495867 caacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 29075895 - 29075781
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| |||| |||||| ||||||||||| | ||  ||||||  ||||||||||||||||  |||||||||||| ||||||||| ||||    
T  29075895 aagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccactaggc 29075796  T
Q  535 caacccaaatgggtt 549  Q
     ||||||| ||||||    
T  29075795 aaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 16773921 - 16773807
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || | |||||| || |||||||| | ||   |||||| |||||||||||||||| || || |||||||||||||||||||| |    
T  16773921 aagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagac 16773822  T
Q  535 caacccaaatgggtt 549  Q
    |||| ||| ||||||    
T  16773821 caactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 551
Target Start/End: Original strand, 29692396 - 29692464
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtttg 551  Q
    |||||| | |||||||||||||| || |||||||||  |||||||||||| ||||||||||||||||||    
T  29692396 tgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaatgggtttg 29692464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 542
Target Start/End: Original strand, 1410669 - 1410728
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    |||||| |||||||||||||||| || | ||||||||||||||||||||| |||||||||    
T  1410669 tgagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaacccaa 1410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 538
Target Start/End: Complemental strand, 21086828 - 21086725
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||| |||||||| ||||| |||||||||||||||| | | || | |||||  | |||||||||||||| ||||||||| || ||||||||| ||| |    
T  21086828 aagaagttaaattaggtcatctaaattgacaccagagataatcgaatctgagatcttgaggaggagcacactgccagatcctaaatcaataccatcagac 21086729  T
Q  535 caac 538  Q
    ||||    
T  21086728 caac 21086725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 16457924 - 16457810
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcca-gatcccaagtcaataccaccaggc 534  Q
    ||||| ||||| |||| ||  ||||||| |||| | |||| ||||  ||||||| | |||||||||||||| ||| | ||||||| ||||||||||||||    
T  16457924 aagaacctaaactagcccacgcaaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggc 16457825  T
Q  535 caacccaaatgggtt 549  Q
    ||||| || ||||||    
T  16457824 caacctaagtgggtt 16457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 19949578 - 19949684
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggcc 535  Q
    |||||| ||||||||   ||||||||||||||| | || | ||||   |||||  |||||||||||||||| | ||||| |||||||||||||||| | |    
T  19949578 aagaagttaaattagtctatccaaattgacaccggtgaaaattgaacctgagagctcgaggaggagcacactctagatctcaagtcaataccaccaagtc 19949677  T
Q  536 aacccaa 542  Q
    |||||||    
T  19949678 aacccaa 19949684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 21589402 - 21589288
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    ||||||||||| |||| || | |||||| |||||||| || | ||   |||||| |||||||| |||| || || || ||||||| ||||||||||||||    
T  21589402 aagaagctaaactagcccacctaaattggcaccagagggaatcgaacctgagacatcgaggagtagcagactcccaggtcccaagccaataccaccaggc 21589303  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  21589302 caacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 542
Target Start/End: Complemental strand, 16436684 - 16436625
Alignment:
Q  483 atgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggccaacccaa 542  Q
    ||||||| | |||||||||||||| |||  ||||||| ||||||||| ||||||||||||    
T  16436684 atgagaccttgaggaggagcacactccaagtcccaagccaataccactaggccaacccaa 16436625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 475
Target Start/End: Original strand, 27840981 - 27841020
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagaga 475  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  27840981 aagaagctaaattagcccatccaaattaacaccagagaga 27841020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 538
Target Start/End: Complemental strand, 43442310 - 43442207
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    ||||| |||||||||| |||||||||||||| |||||||| | ||   |||||| | ||||||||||||||  ||||||| |||  ||||||||| | ||    
T  43442310 aagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaataccactatgc 43442211  T
Q  535 caac 538  Q
    ||||    
T  43442210 caac 43442207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 5390862 - 5390926
Alignment:
Q  484 tgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| |||||||||||||| | | ||  |||||| ||||||||| |||||||||||||||||||    
T  5390862 tgagacctcgaggaggagcactcccaagc-cccaagccaataccactaggccaacccaaatgggtt 5390926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 549
Target Start/End: Complemental strand, 25627150 - 25627057
Alignment:
Q  457 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||||||||||| | ||   |||||| | |||||||||||||| ||  | | ||||| ||||||||| |||||||||||| ||||||    
T  25627150 caaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Complemental strand, 31306870 - 31306837
Alignment:
Q  443 taaattagctcatccaaattgacaccagagagat 476  Q
    |||||||| |||||||||||||||||||||||||    
T  31306870 taaattagttcatccaaattgacaccagagagat 31306837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 43230736 - 43230852
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtca--ataccaccag 532  Q
    |||||| |||| || |||||| |||||||||| ||||||| |||| | |||||  |  ||||||||||||| | |||| |||||| ||  ||||||| ||    
T  43230736 aagaagttaaactaactcatctaaattgacacaagagagaattgaatctgagatcttaaggaggagcacactctcagaacccaagccaatataccactag 43230835  T
Q  533 gccaacccaaatgggtt 549  Q
    |||||||||| ||||||    
T  43230836 gccaacccaagtgggtt 43230852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 549
Target Start/End: Original strand, 892514 - 892550
Alignment:
Q  513 tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  892514 tcccaagccaataccactaggccaacccaaatgggtt 892550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 549
Target Start/End: Complemental strand, 6844793 - 6844729
Alignment:
Q  486 agacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||| |||||||||| ||||| || | || |||||||||||||||| ||||||||||| ||||||    
T  6844793 agacctcgaggaggaacacactcccaaattccaagtcaataccacctggccaacccaagtgggtt 6844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 549
Target Start/End: Original strand, 21549157 - 21549213
Alignment:
Q  494 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  21549157 aggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 436 - 545
Target Start/End: Original strand, 4844473 - 4844583
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||  ||||||| |||| |||||| | ||   |||||| |||||||||||||||| || ||||||||||||||||||||||| |    
T  4844473 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 4844572  T
Q  535 caacccaaatg 545  Q
    |||||||||||    
T  4844573 caacccaaatg 4844583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 436 - 545
Target Start/End: Original strand, 4870169 - 4870279
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||  ||||||| |||| |||||| | ||   |||||| |||||||||||||||| || ||||||||||||||||||||||| |    
T  4870169 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 4870268  T
Q  535 caacccaaatg 545  Q
    |||||||||||    
T  4870269 caacccaaatg 4870279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 10499071 - 10499186
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || ||||||||||| | |||||| | ||   |||||| || |||| ||||| || || |||||||||| ||||||||||||||    
T  10499071 aagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggc 10499170  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  10499171 caacccaagtgggttt 10499186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 13808847 - 13808954
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    ||||||||||||||   ||||||||||||||  ||||||| ||||   |||||| | |||||||||||||| |||||||||||||||||||  ||||| |    
T  13808847 aagaagctaaattaatccatccaaattgacattagagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtcaataagaccagac 13808946  T
Q  535 caacccaa 542  Q
    ||||||||    
T  13808947 caacccaa 13808954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 545
Target Start/End: Complemental strand, 2667976 - 2667866
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    ||||||||||| |||| || | |||||||||| ||||| | | ||   |||||| ||||||| |||||||| || |||||||||| ||||||||||||||    
T  2667976 aagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccaccaggc 2667877  T
Q  535 caacccaaatg 545  Q
    |||||||||||    
T  2667876 caacccaaatg 2667866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 439 - 526
Target Start/End: Original strand, 28531023 - 28531111
Alignment:
Q  439 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaatac 526  Q
    ||||||||||||| || |||||||||||||||||||| |||||  | |||| ||||||||||||| ||  |||||||||||| ||||||    
T  28531023 aagctaaattagcccacccaaattgacaccagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 28531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 458 - 549
Target Start/End: Complemental strand, 14186739 - 14186648
Alignment:
Q  458 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| |||||| | ||   |||||| | |||||||||||||| |||| ||||||| ||||||||| |||||||||||| ||||||    
T  14186739 aaattgacaccggagagaatcgaacctgagaccttgaggaggagcacactccaggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 541
Target Start/End: Original strand, 51903840 - 51903946
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||  |||||||||||| |||||| | ||   ||||||  |||||||||||||||  |||||||||||| |||||||| ||||     
T  51903840 aagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaataccaacaggt 51903939  T
Q  535 caaccca 541  Q
    |||||||    
T  51903940 caaccca 51903946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 5499427 - 5499484
Alignment:
Q  494 aggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||    
T  5499427 aggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggttt 5499484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 508 - 549
Target Start/End: Complemental strand, 16991583 - 16991542
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  16991583 ccagatcccaagccaataccaccaggccaacccaaatgggtt 16991542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 31520617 - 31520682
Alignment:
Q  486 agacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||| |||||||||||||||| || |||||||||| |||| ||||||||||||||||| |||||||    
T  31520617 agacctcgaggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggttt 31520682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 544
Target Start/End: Original strand, 38550366 - 38550475
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    ||||||||||||||||||||||||||| ||||   ||||| ||||   | |||| || |||||||||||||  ||| | || |||||||||||| |||||    
T  38550366 aagaagctaaattagctcatccaaattaacacagaagagaattgaacctcagacctcaaggaggagcacactcccaaaccctaagtcaataccaacaggc 38550465  T
Q  535 caacccaaat 544  Q
    ||||||||||    
T  38550466 caacccaaat 38550475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 8051280 - 8051213
Alignment:
Q  484 tgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||| |||||||| |||| || ||||| ||||||| |||||||||||||||||||||| |||||||    
T  8051280 tgagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggttt 8051213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 36720495 - 36720380
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||  ||| || | |||||||||| ||||||| | ||   ||| || |||||||||||||||| || | |||||||| |||||||||||| |    
T  36720495 aagaagctaaaccagcccacctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagac 36720396  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  36720395 caacccaagtgggttt 36720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 4222255 - 4222141
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||| |||| || |||| | |||||||||||||||||| | ||   | |||| | |||||||||||||| || |||||||||| ||||||||| | ||    
T  4222255 aagaagttaaactaactcacctaaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaataccactaagc 4222156  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  4222155 caacccaagtgggtt 4222141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 10445101 - 10445216
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaa-taccaccagg 533  Q
    |||||||||||||||| ||  ||||||  ||||||||||| | ||   |||||| ||||||||||||||||  |||| ||||||| ||| | |||| |||    
T  10445101 aagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaattgccactagg 10445200  T
Q  534 ccaacccaaatgggtt 549  Q
    ||||||||| ||||||    
T  10445201 ccaacccaagtgggtt 10445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 31788987 - 31789046
Alignment:
Q  491 tcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||||||||||| || |||||||||| ||||| ||| |||||||||||| ||||||    
T  31788987 tcgaggaggagcacactcccagatcccaagccaataacactaggccaacccaagtgggtt 31789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 549
Target Start/End: Complemental strand, 203128 - 203090
Alignment:
Q  511 gatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  203128 gatcccaagtcaataccactaggccaacccaagtgggtt 203090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 7975475 - 7975417
Alignment:
Q  493 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||||||||||| || |||||||||| | ||||||| ||||||||| ||||||||||    
T  7975475 gaggaggagcacactcccagatcccaagcctataccactaggccaacctaaatgggttt 7975417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 14339676 - 14339610
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| | |||||||||||||| || | |||||||| ||||||||||||||||| |||| ||||||    
T  14339676 tgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggccaatccaactgggtt 14339610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 21960617 - 21960551
Alignment:
Q  484 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| |||||||||||||||| | ||| ||||||| ||||||||||||  |||||||| ||||||    
T  21960617 tgagacctcgaggaggagcacactctcaggtcccaagccaataccaccagcgcaacccaattgggtt 21960551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 42430388 - 42430335
Alignment:
Q  496 gaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||    
T  42430388 gaggagcacactccaagatcccaagtcaataccacca-gccaacccaagtgggtt 42430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 46518685 - 46518627
Alignment:
Q  493 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||||||||||| || |||||||||| ||||||||| | |||||||||| |||||||    
T  46518685 gaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggttt 46518627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 541
Target Start/End: Complemental strand, 11612355 - 11612307
Alignment:
Q  494 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaaccca 541  Q
    ||||||||||||| || || |||||||| ||||||||||||||||||||    
T  11612355 aggaggagcacactcccagctcccaagtgaataccaccaggccaaccca 11612307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 545
Target Start/End: Complemental strand, 17554486 - 17554454
Alignment:
Q  513 tcccaagtcaataccaccaggccaacccaaatg 545  Q
    ||||||||||||| |||||||||||||||||||    
T  17554486 tcccaagtcaatatcaccaggccaacccaaatg 17554454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 538
Target Start/End: Original strand, 32651407 - 32651503
Alignment:
Q  443 taaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggccaac 538  Q
    |||| |||| |||| |||||||||| ||||||| | || | |||||  | ||||||||||||||  |||| ||||||| ||||||||| ||||||||    
T  32651407 taaactagcccatctaaattgacactagagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 32651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 442 - 549
Target Start/End: Original strand, 23361617 - 23361725
Alignment:
Q  442 ctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaaccc 540  Q
    |||||||||| || | |||||||||||||||||| ||||   |||||| | |||||||||||||| || | |||||||||||||||||||||| ||||||    
T  23361617 ctaaattagcccacctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaaccc 23361716  T
Q  541 aaatgggtt 549  Q
    || ||||||    
T  23361717 aagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 4830601 - 4830486
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    ||||||||||||||   ||||||||||||||||  | | ||||||   |||||| |||||||||| ||||| | ||||||||||   |||||||||||||    
T  4830601 aagaagctaaattaatccatccaaattgacaccgtataaatttgaacctgagacctcgaggaggaacacactctcagatcccaaacaaataccaccaggc 4830502  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  4830501 caacccaagtgggttt 4830486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 8485113 - 8484998
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || | |||||| |||| |||||| | ||  ||||||| || | ||||||||||| | ||| |||||||  |||||||||||||    
T  8485113 aagaagctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggc 8485014  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  8485013 caacccaagtgggttt 8484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 20994419 - 20994534
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgagg-aggagcacacgcc-agatcccaagtcaataccaccagg 533  Q
    |||||||||||||||| |||||||||||  |||||||| | | ||   |||||| | |||| |||||||||| || || ||||||||||||||||| |||    
T  20994419 aagaagctaaattagcccatccaaattggtaccagagataatcgatcctgagactttgagggaggagcacactcccaggtcccaagtcaataccactagg 20994518  T
Q  534 ccaacccaaatgggtt 549  Q
    ||||||||| ||||||    
T  20994519 ccaacccaagtgggtt 20994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 968476 - 968362
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || | |||||| || | |||||| | ||   |||||| |||||||||||||||| || || ||||||| ||||||||||||||    
T  968476 aagaagctaaattagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggc 968377  T
Q  535 caacccaaatgggtt 549  Q
    |||| ||| ||||||    
T  968376 caactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 14701379 - 14701449
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 506  Q
    |||||| ||||||||||||||||||||||||||| ||||| |||| | |||||| | ||| ||||||||||    
T  14701379 aagaagttaaattagctcatccaaattgacaccaaagagaattgaatctgagactttgagaaggagcacac 14701449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 547
Target Start/End: Complemental strand, 2203603 - 2203494
Alignment:
Q  439 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaa 537  Q
    ||||||||||||| || |||||||| |||| | |||| ||||   |||||| | |||||||||||||| || || ||||||| ||||||||| |||||||    
T  2203603 aagctaaattagcccacccaaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaa 2203504  T
Q  538 cccaaatggg 547  Q
    ||||| ||||    
T  2203503 cccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 549
Target Start/End: Complemental strand, 32157248 - 32157191
Alignment:
Q  493 gaggaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||    
T  32157248 gaggaggagcatactccaaggtcccaagtcaataccaccaggccaacccaaatgggtt 32157191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 16852406 - 16852339
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||| |||||||||||||||| || || ||||||| ||||||||| |||||||||||| |||||||    
T  16852406 tgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 28783174 - 28783059
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || |||||||| ||||   |||| | ||  ||||||| | |||||||||||||| || || || |||| ||||||||||| ||    
T  28783174 aagaagctaaattagcccacccaaattggcaccgaggagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagc 28783075  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  28783074 caacccaagtgggttt 28783059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 533
Target Start/End: Complemental strand, 7140822 - 7140725
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccagg 533  Q
    |||||| ||||||||| || ||||||||| ||| |||||| | || | |||||  |||||||||||||||| || |||||||||| |||||||||||||    
T  7140822 aagaaggtaaattagcccacccaaattgatacc-gagagaatcgaatctgagagctcgaggaggagcacacacccagatcccaagccaataccaccagg 7140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 8059746 - 8059632
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    ||||||||||| |||||||  |||||||||| ||| |||| | ||   |||||| | |||||||| ||||| | || || |||||||||||||| |||||    
T  8059746 aagaagctaaactagctcactcaaattgacatcagggagaatggaacctgagaccttgaggaggatcacactctcacatgccaagtcaataccatcaggc 8059647  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  8059646 caacccaagtgggtt 8059632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 11819890 - 11819776
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || |||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  ||||||| | ||||||| |||     
T  11819890 aagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactaggg 11819791  T
Q  535 caacccaaatgggtt 549  Q
    |||||||||||||||    
T  11819790 caacccaaatgggtt 11819776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 26688979 - 26688865
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcca-gatcccaagtcaataccaccaggc 534  Q
    ||||||||||| |||| || |||||||||||| ||  |||  |||   |||||| | |||||||||||||| ||| | ||||||| ||| ||||||||||    
T  26688979 aagaagctaaactagcccacccaaattgacactaggaagaactgaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggc 26688880  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  26688879 caacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 27750844 - 27750730
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||  ||||||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  ||||||| | ||||||| |||     
T  27750844 aagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccacgaggg 27750745  T
Q  535 caacccaaatgggtt 549  Q
    |||||||||||||||    
T  27750744 caacccaaatgggtt 27750730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 546
Target Start/End: Original strand, 35690048 - 35690137
Alignment:
Q  458 aaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgg 546  Q
    |||||||||||||||||| | ||   |||||| | ||||||||||| || || |||||||||| ||||||||| |||||||| |||||||    
T  35690048 aaattgacaccagagagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaataccactaggccaacacaaatgg 35690137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 5801113 - 5801046
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    ||||||||||||  ||||||||| || ||||||||||  |||||||||||| |||||||| |||||||    
T  5801113 tgagacgtcgagacggagcacactcctagatcccaagctaataccaccaggtcaacccaagtgggttt 5801046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 19703497 - 19703564
Alignment:
Q  484 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||| | |||||||||||||| | ||| ||||||| ||||||||| |||||||||||| |||||||    
T  19703497 tgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttt 19703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 529
Target Start/End: Complemental strand, 6536634 - 6536540
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccac 529  Q
    |||||||||||||| | || | |||||| ||||||||||| ||||   |||||| | |||||||||||||| || || ||||||| |||||||||    
T  6536634 aagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 6536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 24351690 - 24351760
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 506  Q
    ||||||||||||||||||||||||||||| |||  ||||| ||||   |||||| || |||||||| ||||    
T  24351690 aagaagctaaattagctcatccaaattgataccgaagagaattgaacttgagacctcaaggaggagtacac 24351760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 30483846 - 30483960
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||| ||||||||  ||| ||||||| ||| ||||||| ||||   ||||||   |||||||||||||| || | |||||||| |||||||||  |||    
T  30483846 aagaagataaattagtccattcaaattggcacaagagagaattgaacctgagactctgaggaggagcacactcccatatcccaagccaataccactgggc 30483945  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  30483946 caacccaagtgggtt 30483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 33727835 - 33727905
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac 506  Q
    |||||||||||||||| ||||||||||||||| |||| || | ||   |||||| | ||||||||||||||    
T  33727835 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacac 33727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 548
Target Start/End: Original strand, 29858059 - 29858124
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggt 548  Q
    |||||| |||||||||||||||| ||  | ||||||| ||||||||||||||||| |||| |||||    
T  29858059 tgagacctcgaggaggagcacactccctggtcccaagccaataccaccaggccaatccaagtgggt 29858124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 553
Target Start/End: Original strand, 22268973 - 22269013
Alignment:
Q  513 tcccaagtcaataccaccaggccaacccaaatgggtttggt 553  Q
    ||||||| ||| |||||||||||||||||| ||||||||||    
T  22268973 tcccaagccaacaccaccaggccaacccaagtgggtttggt 22269013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 43292398 - 43292442
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttga 480  Q
    ||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  43292398 aagaagctaaattagttcatctaaattgacaccggagagaattga 43292442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 25931120 - 25931005
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    ||||| |||||||| ||||||||||||||||||| ||||| | || | |||||| |||||||  | ||||| | ||| ||||||  ||||||||||||||    
T  25931120 aagaaactaaattaactcatccaaattgacaccaaagagaatcgaatctgagacttcgaggataaacacactctcaggtcccaaaccaataccaccaggc 25931021  T
Q  535 caacccaaatgggttt 550  Q
    ||||||||||||||||    
T  25931020 caacccaaatgggttt 25931005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 551
Target Start/End: Complemental strand, 37480189 - 37480073
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || ||||||||  ||| | |||| | ||   |||||| | |||||||||||||| | ||| ||||||| ||||||||||||||    
T  37480189 aagaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggc 37480090  T
Q  535 caacccaaatgggtttg 551  Q
    |||||||| ||||||||    
T  37480089 caacccaagtgggtttg 37480073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 39715058 - 39714991
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||| |||||||||||||||| || || ||||||||||||||||||| |||||||||| |||||||    
T  39715058 tgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggttt 39714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 21195638 - 21195753
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||||||||||||||| |||| || | ||   |||||| | ||||||||||||||  |||  | ||||| | ||||||| |||     
T  21195638 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagttccaagcctataccactaggg 21195737  T
Q  535 caacccaaatgggttt 550  Q
    ||||||||||||||||    
T  21195738 caacccaaatgggttt 21195753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 34041598 - 34041665
Alignment:
Q  484 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||| | |||||||||||||| | ||||||| ||||||||||||| |||||||||||| |||||||    
T  34041598 tgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttt 34041665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 549
Target Start/End: Complemental strand, 41202357 - 41202250
Alignment:
Q  443 taaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaaccca 541  Q
    ||||||||  |||||||||||||| |||||| | ||||   | |||| ||||||||||||| || || ||||| || |||||||||||||| ||||||||    
T  41202357 taaattagtccatccaaattgacatcagagaaaattgaacctaagacttcgaggaggagcatactcccagatctcaggtcaataccaccagaccaaccca 41202258  T
Q  542 aatgggtt 549  Q
    ||| ||||    
T  41202257 aataggtt 41202250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 1435177 - 1435064
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || |||||||||||||||||||| | ||   |||||| | |||||| ||||||| || | |||||||| || |||||| | ||    
T  1435177 aagaagctaaattagcccacccaaattgacaccagagagaatcga-actgagaccttgaggagaagcacactcctaaatcccaagccagtaccactatgc 1435079  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  1435078 caacccaagtgggtt 1435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 552
Target Start/End: Original strand, 29197385 - 29197455
Alignment:
Q  483 atgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtttgg 552  Q
    ||||||| || ||||||||||||| ||  | ||||||||||||||||||| |||||||||| |||||||||    
T  29197385 atgagacatcaaggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggtttgg 29197455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 42327357 - 42327471
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||| ||||||||||| || |||||||| ||||  ||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||||| ||||    
T  42327357 aagatgctaaattagcccacccaaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggc 42327456  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  42327457 caacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 23230567 - 23230681
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||| |||||||||||||||||||||||||  |||||| ||||   ||  || | ||||||||||||||  |||| |||||| ||||||||| | | |    
T  23230567 aagaagttaaattagctcatccaaattgacactggagagaattgaacctggaactttgaggaggagcacactcccagttcccaaatcaatacca-ctgac 23230665  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  23230666 caacccaattgggttt 23230681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 3001435 - 3001386
Alignment:
Q  494 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    ||||||||||||| || ||||| |||||||||||||| ||||||||||||    
T  3001435 aggaggagcacactcctagatctcaagtcaataccactaggccaacccaa 3001386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 549
Target Start/End: Original strand, 4438998 - 4439055
Alignment:
Q  493 gaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||||||||| | |||||||||||| |||||||  |||||||||||| ||||||    
T  4438998 gaggaggagcacactctcagatcccaagttaataccattaggccaacccaagtgggtt 4439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 549
Target Start/End: Complemental strand, 19244222 - 19244109
Alignment:
Q  437 agaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggcc 535  Q
    |||| |||||||||| ||  ||||||| ||||||||||| | ||   |||||| | | |||||||||||| | ||| ||||||||||||||||  || ||    
T  19244222 agaaactaaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagacc 19244123  T
Q  536 aacccaaatgggtt 549  Q
    ||||||| ||||||    
T  19244122 aacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 548
Target Start/End: Original strand, 37755933 - 37756046
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||  ||||||| || ||||| || | ||   |||||| ||||| |||||||||  || || ||||||| ||||||||||| ||    
T  37755933 aagaagctaaattagcccactcaaattggcatcagagggagtcgaacttgagacctcgagtaggagcacattcccaggtcccaagccaataccaccaagc 37756032  T
Q  535 caacccaaatgggt 548  Q
    |||||||| |||||    
T  37756033 caacccaagtgggt 37756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 7799052 - 7799112
Alignment:
Q  491 tcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||||||||||||| ||  | ||||||| ||||||||||||| |||||||| |||||||    
T  7799052 tcgaggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgggttt 7799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 472
Target Start/End: Original strand, 11127965 - 11128001
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagag 472  Q
    |||||||||||||||| |||| |||||||||||||||    
T  11127965 aagaagctaaattagcacatctaaattgacaccagag 11128001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 548
Target Start/End: Original strand, 16918597 - 16918653
Alignment:
Q  493 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggt 548  Q
    |||||||||||||| || |||||||||  ||||||||| |||||||||||| |||||    
T  16918597 gaggaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgggt 16918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 549
Target Start/End: Complemental strand, 18259786 - 18259730
Alignment:
Q  494 aggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||||| | || ||| |||| |||||||||||||||||| ||||||||||    
T  18259786 aggaggagcacactctcaaatctcaagccaataccaccaggccaactcaaatgggtt 18259730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 549
Target Start/End: Complemental strand, 32106602 - 32106566
Alignment:
Q  513 tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  32106602 tcccaagtcaacaccaccaggccaacccaagtgggtt 32106566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 41595 - 41709
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    |||| ||||||||||| || ||||||||||| |||||||| ||||   |||||| ||||||||||||| || | |||||| |||| ||||||||| ||||    
T  41595 aagaggctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggc 41694  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  41695 caacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 15137667 - 15137553
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    ||||| |||||||||| || |||||||||||||||||||| |  |   |||||| | |||||||||||||| || | ||||||||||| |||||||||||    
T  15137667 aagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggc 15137568  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  15137567 caacccaagtgggtt 15137553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 508 - 551
Target Start/End: Complemental strand, 35119424 - 35119381
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatgggtttg 551  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  35119424 ccagatcccaagtcaataccactaggccaacccaaatgggtttg 35119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 45709718 - 45709785
Alignment:
Q  484 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||| |||||||||||||||| | |||||||||||  |||||||| ||||||||||||||||||||    
T  45709718 tgagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaaatgggttt 45709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 41519227 - 41519333
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || | |||||||||| |||||||   ||   |||||| | |||||||||||||| || | |||||||||||||||||| ||||    
T  41519227 aagaagctaaattagcccacctaaattgacac-agagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggc 41519325  T
Q  535 caacccaa 542  Q
    ||||||||    
T  41519326 caacccaa 41519333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 43663057 - 43663164
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||  || ||||||||| ||| |||||||| ||   |||||  |||||||||| ||| | || || |||||||||||||||| |||||    
T  43663057 aagaagctaaattagtccacccaaattgataccggagagattcgaacctgagatctcgaggaggaccacgctcctaggtcccaagtcaataccatcaggc 43663156  T
Q  535 caacccaa 542  Q
    ||||||||    
T  43663157 caacccaa 43663164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 22760929 - 22760863
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| | |||||||||||||| || || |||||||||||||||||||| ||||||||| ||||||    
T  22760929 tgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 23301612 - 23301678
Alignment:
Q  484 tgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| || ||||||||||||| ||  | |||||||||||||||||||||||||||||| ||||||    
T  23301612 tgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 26459372 - 26459486
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    ||||||||||| || | | | ||||||| ||||||||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||||| ||||    
T  26459372 aagaagctaaactaaccccttcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggc 26459471  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  26459472 caacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 48772004 - 48771938
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| || ||||||||||||| || |||||||||| ||||||||||| |||||||||| ||||||    
T  48772004 tgagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 549
Target Start/End: Original strand, 25021343 - 25021411
Alignment:
Q  482 tatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||| | |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  25021343 tatgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 549
Target Start/End: Complemental strand, 4161327 - 4161288
Alignment:
Q  510 agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  4161327 agatcccaagccaataccaccagaccaacccaaatgggtt 4161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 546
Target Start/End: Complemental strand, 7721483 - 7721372
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    ||||||||||||||   ||||||||||||||||||||||| | ||  ||||||| | ||||||||| ||||  |||| ||||||  |||||||||  | |    
T  7721483 aagaagctaaattattccatccaaattgacaccagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaataccacttgac 7721384  T
Q  535 caacccaaatgg 546  Q
    || |||||||||    
T  7721383 caccccaaatgg 7721372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 23552184 - 23552117
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||| | |||||||||||||| || || ||||||||||||| ||| |||||||||||| |||||||    
T  23552184 tgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggttt 23552117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 475
Target Start/End: Original strand, 24438209 - 24438248
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagaga 475  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  24438209 aagaagctaaattagcccattcaaattgacaccagagaga 24438248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 7801234 - 7801180
Alignment:
Q  496 gaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| || || ||||||||||||||||||||||||| |||| ||||||    
T  7801234 gaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 20335793 - 20335907
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||| ||||||||| |||||||||||||| | | |||| | ||   |||||| ||||||||||||||||  |||  ||||||| ||||||| | || |    
T  20335793 aagaagttaaattagcccatccaaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagac 20335892  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  20335893 caacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 23595786 - 23595736
Alignment:
Q  493 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    |||||||||||||| || ||||| ||||||||||||||||| |||||||||    
T  23595786 gaggaggagcacactccgagatctcaagtcaataccaccagaccaacccaa 23595736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 25590725 - 25590611
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| ||  ||||||||||||  ||| | | ||    ||||| ||||||||||||||||  ||||||| |||| |||||||| ||||     
T  25590725 aagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactcccagatctcaagccaataccaacaggt 25590626  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  25590625 caacccaagtgggtt 25590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 25956314 - 25956368
Alignment:
Q  496 gaggagcacacgcca-gatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| ||| | ||||||| ||||||||| |||||||||||||||||||    
T  25956314 gaggagcacactccaaggtcccaagccaataccactaggccaacccaaatgggtt 25956368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 26526347 - 26526289
Alignment:
Q  493 gaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    |||||||||||||| | || |||| |||||||||||||||| |||| ||||||||||||    
T  26526347 gaggaggagcacactctcaaatcctaagtcaataccaccagaccaatccaaatgggttt 26526289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 43590973 - 43590907
Alignment:
Q  484 tgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| | |||||||||||||| ||  | ||||||| |||||||||||||||||||||| ||||||    
T  43590973 tgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 43590907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 550
Target Start/End: Complemental strand, 41487398 - 41487361
Alignment:
Q  513 tcccaagtcaataccaccaggccaacccaaatgggttt 550  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  41487398 tcccaagccaataccaccaggccaacccaagtgggttt 41487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 21854614 - 21854550
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatggg 547  Q
    |||||| | |||||||||||||| || ||||||| || |||||||| ||||||||||||| ||||    
T  21854614 tgagactttgaggaggagcacactcccagatccctagccaataccatcaggccaacccaagtggg 21854550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 42262057 - 42262145
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaa 523  Q
    |||||| ||||||| | ||||||| ||| ||| ||||||| |||| | |||||| |  ||||||||||||| | |||||||||||||||    
T  42262057 aagaaggtaaattaacccatccaatttggcacaagagagaattgaatctgagacctttaggaggagcacactctcagatcccaagtcaa 42262145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 48582799 - 48582843
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttga 480  Q
    ||||||||||||||||||| |||||||| || |||||||| ||||    
T  48582799 aagaagctaaattagctcacccaaattggcatcagagagagttga 48582843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 28635810 - 28635696
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || |||||||| ||||||||||| | ||   | |||| || ||||||||||||| || ||||||||||||| ||||||||||     
T  28635810 aagaagctaaattagcccacccaaattggcaccagagagaatcgaacctaagacctccaggaggagcacactcccagatcccaagtcagtaccaccagga 28635711  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  28635710 caacccaagtgggtt 28635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 13496355 - 13496241
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggc 534  Q
    ||||||||||||||||||||||||||||  |||||| ||| | ||  | ||||| |||| ||||| ||||| | ||  ||||||||||||||||||| ||    
T  13496355 aagaagctaaattagctcatccaaattgttaccagaaagaatcgaacacgagacctcgaagaggaacacactcacatgtcccaagtcaataccaccatgc 13496256  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  13496255 caacccaagtgggtt 13496241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 7949416 - 7949531
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || | |||||||||||||||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||| | ||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggc 7949515  T
Q  535 caacccaaatgggttt 550  Q
    || ||||| |||||||    
T  7949516 cagcccaagtgggttt 7949531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 51250484 - 51250599
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || |||||||| |||| ||| || | ||   |||||  | |||| ||||||||| || |||||||||| ||||||||||||||    
T  51250484 aagaagctaaattagcccacccaaattggcaccggagggaatcgaacttgagatcttgaggcggagcacactcccagatcccaagccaataccaccaggc 51250583  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  51250584 caacccaagtgggttt 51250599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 47044783 - 47044717
Alignment:
Q  484 tgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| ||||||||||||| || | ||||||||||||||||||||||||||||| |||| ||||||    
T  47044783 tgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 549
Target Start/End: Complemental strand, 51948594 - 51948480
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||| ||||||||  |||  ||||||||||  |||||| ||||   |||||| ||||||||| |||||| || ||||||||||||||||| ||||||     
T  51948594 aagaagttaaattagtccatttaaattgacactggagagaattgaacctgagacctcgaggaggggcacactcctagatcccaagtcaatactaccagga 51948495  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  51948494 caacccaagtgggtt 51948480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 549
Target Start/End: Original strand, 9241037 - 9241101
Alignment:
Q  486 agacgtcgaggaggagcacacg-ccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||| ||||| ||||||||||  |||||||||||| |||||||||||||||||||||| ||||||    
T  9241037 agacctcgagcaggagcacactaccagatcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 549
Target Start/End: Original strand, 19229173 - 19229283
Alignment:
Q  439 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgccagatcccaagtcaataccaccaggccaac 538  Q
    ||||||||| ||| || ||||||||  ||||| |||| | ||   |||||| |||||||||||||||  | |  ||||| | ||||||||||||||||||    
T  19229173 aagctaaataagcccacccaaattggtaccagggagaatcgaacctgagacctcgaggaggagcacattctaagtcccaggccaataccaccaggccaac 19229272  T
Q  539 ccaaatgggtt 549  Q
    |||||||||||    
T  19229273 ccaaatgggtt 19229283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 549
Target Start/End: Original strand, 19238588 - 19238653
Alignment:
Q  485 gagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||| |||||||||||||||| ||  | ||||||| |||||||||||||||||||||| ||||||    
T  19238588 gagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 549
Target Start/End: Original strand, 37109334 - 37109427
Alignment:
Q  457 caaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||| ||||||||||| | ||   |||||| | |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||    
T  37109334 caaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 542
Target Start/End: Original strand, 21660154 - 21660213
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    |||||| ||||||| |||||||| || ||||| ||||||||||||||||| |||||||||    
T  21660154 tgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaa 21660213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 542
Target Start/End: Original strand, 21668918 - 21668977
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    |||||| ||||||| |||||||| || ||||| ||||||||||||||||| |||||||||    
T  21668918 tgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaa 21668977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 551
Target Start/End: Original strand, 27965545 - 27965588
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatgggtttg 551  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  27965545 ccagatcccaagccaataccactaggccaacccaagtgggtttg 27965588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 549
Target Start/End: Original strand, 55427165 - 55427276
Alignment:
Q  439 aagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaa 537  Q
    ||||||||||||| || |||||||| ||||   |||| | ||   |||||| ||||| ||||||| || || || ||||||| |||||||||||||||||    
T  55427165 aagctaaattagcccacccaaattggcaccgcggagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaataccaccaggccaa 55427264  T
Q  538 cccaaatgggtt 549  Q
    ||||| ||||||    
T  55427265 cccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 549
Target Start/End: Complemental strand, 46545819 - 46545711
Alignment:
Q  442 ctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaaccc 540  Q
    |||||||||  |||| ||||||||| |||||| | | || | |||||  | |||||||||||||| | ||| || |||| ||||||||| ||||||||||    
T  46545819 ctaaattagtccatctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaaccc 46545720  T
Q  541 aaatgggtt 549  Q
    || ||||||    
T  46545719 aagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 24641207 - 24641266
Alignment:
Q  491 tcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||    
T  24641207 tcgaggaggagcacactcccagatcccaagtcaataccaccaagccaacccaaatgggtt 24641266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 31622953 - 31623068
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || ||||||||||||| ||| ||||  |   |||||| ||||||||||||||||  |||| ||||||| |||||||||| | |    
T  31622953 aagaagctaaattagcccacccaaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggac 31623052  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  31623053 caacccaagtgggttt 31623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 33549218 - 33549103
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    ||||||||||||||||||| | |||||| || | |||||| | ||   |||||| |||||||||||||||| || || ||||||| |||||||||||| |    
T  33549218 aagaagctaaattagctcacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagac 33549119  T
Q  535 caacccaaatgggttt 550  Q
    |||||||| |||||||    
T  33549118 caacccaagtgggttt 33549103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 542
Target Start/End: Original strand, 6776586 - 6776676
Alignment:
Q  453 catccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    |||||||||||| |||||||||| |  |   |||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  6776586 catccaaattgaaaccagagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaataccaccaggccaacccaa 6776676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 12234469 - 12234584
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||| | |||| ||||||||||  |||||| | ||   |||||| |||||  ||||||||| || || ||||||||||||||||||||||    
T  12234469 aagaagctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggc 12234568  T
Q  535 caacccaaatgggttt 550  Q
    ||||| || |||||||    
T  12234569 caacctaagtgggttt 12234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 548
Target Start/End: Original strand, 6758384 - 6758497
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacac-gccagatcccaagtcaataccaccaggc 534  Q
    ||||||||||||| || || | |||||||||||||||||| | ||   |||||| |||||| |||||||||  ||| |||| ||| ||||||||||||||    
T  6758384 aagaagctaaatttgcccacctaaattgacaccagagagaatcgatcttgagacctcgaggtggagcacactcccaaatcctaagccaataccaccaggc 6758483  T
Q  535 caacccaaatgggt 548  Q
    |||| ||| |||||    
T  6758484 caacacaagtgggt 6758497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 538
Target Start/End: Complemental strand, 28364044 - 28363948
Alignment:
Q  443 taaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgc-cagatcccaagtcaataccaccaggccaac 538  Q
    ||||||||| ||||||||||||||||||||| | | || | |||||| | |||||||||||||| | ||||||||||  ||||||||| | ||||||    
T  28364044 taaattagcccatccaaattgacaccagagataatcgaatctgagaccttgaggaggagcacactcgcagatcccaaaccaataccactatgccaac 28363948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 12188322 - 12188381
Alignment:
Q  493 gaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtttg 551  Q
    |||||||||||||| || || ||||||| ||||||||| |||||||||||| ||||||||    
T  12188322 gaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtttg 12188381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 547
Target Start/End: Original strand, 32613175 - 32613214
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatggg 547  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  32613175 ccagaccccaagtcaataccaccaggccaacccaagtggg 32613214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 529
Target Start/End: Complemental strand, 346597 - 346551
Alignment:
Q  483 atgagacgtcgaggaggagcacacgccagatcccaagtcaataccac 529  Q
    ||||||| |||||||| ||||||| |||| |||||||||||||||||    
T  346597 atgagacctcgaggagaagcacactccaggtcccaagtcaataccac 346551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 21418536 - 21418470
Alignment:
Q  484 tgagacgtcgaggaggagcacacgccaga-tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| | |||||||||||||| ||  | ||||||| |||||||||||||||||||||| ||||||    
T  21418536 tgagacatggaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 21418470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 30127466 - 30127400
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| |||| ||||||||||| || ||| |||||| |||||||||||| ||||||||| ||||||    
T  30127466 tgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 31282556 - 31282523
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacacca 469  Q
    ||||||||||||||||||| ||||||||||||||    
T  31282556 aagaagctaaattagctcacccaaattgacacca 31282523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 542
Target Start/End: Complemental strand, 34444839 - 34444810
Alignment:
Q  513 tcccaagtcaataccaccaggccaacccaa 542  Q
    ||||||||||||||||||||||||||||||    
T  34444839 tcccaagtcaataccaccaggccaacccaa 34444810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 549
Target Start/End: Complemental strand, 28028566 - 28028530
Alignment:
Q  513 tcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  28028566 tcccaagtcaacaccaccaggccaacccaagtgggtt 28028530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 549
Target Start/End: Original strand, 32201905 - 32201961
Alignment:
Q  494 aggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||||| |  |||||||||| ||||||||||| | |||||||||||||||    
T  32201905 aggaggagcacactctgagatcccaagccaataccaccaagtcaacccaaatgggtt 32201961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 542
Target Start/End: Original strand, 33931982 - 33932014
Alignment:
Q  510 agatcccaagtcaataccaccaggccaacccaa 542  Q
    |||||||||||||||||||||||| ||||||||    
T  33931982 agatcccaagtcaataccaccaggtcaacccaa 33932014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 542
Target Start/End: Complemental strand, 11624 - 11535
Alignment:
Q  454 atccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    ||||||||| |||||||||||| | ||   |||||| |||||||||||||||| || |||||||||| |||||||||||||||| |||||    
T  11624 atccaaattaacaccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccaccaggccatcccaa 11535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 15285 - 15399
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagagagatttgagtatgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggc 534  Q
    |||||||||||||||| || | |||||| || | |||||| | ||   |||||| |||||||||||||||| || || ||||||| |||||||||||| |    
T  15285 aagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagac 15384  T
Q  535 caacccaaatgggtt 549  Q
    |||||||| ||||||    
T  15385 caacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 549
Target Start/End: Original strand, 12465 - 12498
Alignment:
Q  516 caagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||||||||||||||||||||||||||    
T  12465 caagtcaataccaccaggccaacccaaatgggtt 12498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 549
Target Start/End: Original strand, 22793 - 22826
Alignment:
Q  516 caagtcaataccaccaggccaacccaaatgggtt 549  Q
    ||||||||||||||||||||||||||||||||||    
T  22793 caagtcaataccaccaggccaacccaaatgggtt 22826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 542
Target Start/End: Original strand, 850 - 909
Alignment:
Q  484 tgagacgtcgaggaggagcacacgcc-agatcccaagtcaataccaccaggccaacccaa 542  Q
    |||||| |||||||||||||||  || |||||||||| |||||||||||||||| |||||    
T  850 tgagacttcgaggaggagcacattcccagatcccaagccaataccaccaggccaccccaa 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Original strand, 25309 - 25346
Alignment:
Q  436 aagaagctaaattagctcatccaaattgacaccagaga 473  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  25309 aagaagctaaaatagctcattcaaattgacaccagaga 25346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 549
Target Start/End: Original strand, 42555 - 42596
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatgggtt 549  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  42555 ccagattccaagtcaataccactaggccaacccaactgggtt 42596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 10260 - 10216
Alignment:
Q  508 ccagatcccaagtcaataccaccaggccaacccaaatgggtttgg 552  Q
    |||||||||||| ||||| || ||||||||||||| |||||||||    
T  10260 ccagatcccaagccaatatcatcaggccaacccaagtgggtttgg 10216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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