View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_23 (Length: 550)
Name: NF10110_2D_low_23
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 21 - 550
Target Start/End: Original strand, 43102434 - 43102963
Alignment:
| Q |
21 |
acaatgaagaggttggaggctgcagaggcagctggaactccggtgaaaccgaagtgaaagacaaacaagtaatttagaggaagatggaggagagtgccag |
120 |
Q |
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| T |
43102434 |
acaatgaagaggttggaggctgcagaggcagctgggactccggtgaaaccgaagtgaaagacaaacaagtaatttagaggaagatggaggagagtgccag |
43102533 |
T |
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| Q |
121 |
caagtgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtatagggtggatgaatgaatttgtgatgagatcagggagagagaa |
220 |
Q |
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| T |
43102534 |
caagtgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtatagggtggatgaatgaatttgtgatgagatcagggagagagaa |
43102633 |
T |
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| Q |
221 |
tattagatatgtgtgagccatggctgtgatctttgggttctggtgcaaccaaatgaggatttgtgacatgttaagccacatgaaggaaatgggaatggaa |
320 |
Q |
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| T |
43102634 |
tattagatatgtgtgagccatggctgtgatctttgggttctggtgcaaccaaatgaggatttgtgacatgttaagccacatgaaggaaatgggaatggaa |
43102733 |
T |
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| Q |
321 |
catagtaataggaagaggatgcaacgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacaaagaggttccattccgagag |
420 |
Q |
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| T |
43102734 |
catagtaataggaagaggatgcaacgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacagagaggttccattccgagag |
43102833 |
T |
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| Q |
421 |
agagaccggagagaactgagtagccggtgatgttggcgaaggcgatggcgagtgaaccggctgcaagttcaagttctcctaggtagcctaaaaacatcat |
520 |
Q |
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| T |
43102834 |
agagaccggagagaactgagtagccggtgatgttggcgaaggcgatggcgagtgaaccggctgcaagttcaagttctcctaggtagcctaaaaacatcat |
43102933 |
T |
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| Q |
521 |
ggacaccatggaacgagagtagaaaataag |
550 |
Q |
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| T |
43102934 |
ggacaccatggaacgagaatagaaaataag |
43102963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 490
Target Start/End: Complemental strand, 33948749 - 33948604
Alignment:
| Q |
345 |
cgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacaaagaggttccattccgagagagagaccggagagaactgagtagc |
444 |
Q |
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| T |
33948749 |
cgttgaagtgttaatgatagaagttttggacggttagcaccaaaggcttgagaacaaagaggttccatacctaaagataaaccagaaagaactgaataac |
33948650 |
T |
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| Q |
445 |
cggtgatgttggcgaaggcgatggcgagtgaaccggctgcaagttc |
490 |
Q |
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| T |
33948649 |
cggttatgtttgcaaaagctatggctaatgaacctgatgcaagttc |
33948604 |
T |
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