View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_29 (Length: 372)
Name: NF10110_2D_low_29
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_29 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 26 - 372
Target Start/End: Original strand, 519809 - 520155
Alignment:
| Q |
26 |
atggctgtatttttcaggacggtgtgtgcttcacctctttagactacaaaaatgctcaacctgacccccttggagagtttgcagagaatttactcgctga |
125 |
Q |
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| T |
519809 |
atggctgtatttttcacgacggtgtgtggttcacctctttagactacaaaaatgctcaacctgacccccttcgagagtttgcggagaatttactcgctga |
519908 |
T |
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| Q |
126 |
aattaacaccaataatatgaaagacattactcgcttttgtaatgtctttgttgatttaaatttccaggtacttttcctttctgttgnnnnnnngggtgga |
225 |
Q |
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| T |
519909 |
aattaacaccaataatatgaaagacattactcgcttttgtaatgtctttgttgatttgaatttccaggtacttttcctttctgttgtttttttgggtgga |
520008 |
T |
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| Q |
226 |
tttcgcatgcctaaactacccttgatttttctctttcatctcatgcatgccatgaacaacaacattttgtccatttttatttcattatcatccggttatt |
325 |
Q |
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| T |
520009 |
tttcgcatgcctaaactacccttgctttttctctttcatctcatgcatgccatgaacaacaacattttgtccatttttatttcattatcatccggttatt |
520108 |
T |
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| Q |
326 |
taactcgtgcgcctgatgtagctatttaaccgtttttatgcaacatc |
372 |
Q |
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| T |
520109 |
taactagtgcgcctgatgtagctatttaaccgtgtttatgcaacatc |
520155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 26 - 372
Target Start/End: Complemental strand, 366747 - 366401
Alignment:
| Q |
26 |
atggctgtatttttcaggacggtgtgtgcttcacctctttagactacaaaaatgctcaacctgacccccttggagagtttgcagagaatttactcgctga |
125 |
Q |
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| T |
366747 |
atggctgtatttttcaggacggtgtgtggttcacctctttagactacaaaaatgctcaacctgacccccttcgagagtttgctgagaatttactcgttga |
366648 |
T |
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| Q |
126 |
aattaacaccaataatatgaaagacattactcgcttttgtaatgtctttgttgatttaaatttccaggtacttttcctttctgttgnnnnnnngggtgga |
225 |
Q |
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| T |
366647 |
aattaacaccaatactatgaaagacattactcgcttttgtaatgtctttgttgatttgaatttccaggtacttttcctttctgttgtttttttgggtgga |
366548 |
T |
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| Q |
226 |
tttcgcatgcctaaactacccttgatttttctctttcatctcatgcatgccatgaacaacaacattttgtccatttttatttcattatcatccggttatt |
325 |
Q |
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| T |
366547 |
ttttgtatgcctaaaccacccttgctttttctctttcatctcatgcatgccatgaacaacaacattttgtccatttttatttcattatcatccggttatt |
366448 |
T |
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| Q |
326 |
taactcgtgcgcctgatgtagctatttaaccgtttttatgcaacatc |
372 |
Q |
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| T |
366447 |
taactagtgcgcctgatgtagctatttaaccgtgtttatgcaacatc |
366401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 529530 - 529698
Alignment:
| Q |
35 |
tttttcaggacggtgtgtgcttcacctctttagactacaaaaatgctcaacctgacccccttggagagtttgcagagaatttactcgctgaaattaacac |
134 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||| |
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| T |
529530 |
tttttcaggacggtgtgtggttcacctctttagactacaaaaatgctcaacctgacccccttcgggagtttgctgagaatttagtcgctgaaattaacac |
529629 |
T |
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| Q |
135 |
caataatatgaaagacattactcgcttttgtaatgtctttgttgatttaaatttccaggtacttttcct |
203 |
Q |
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| T |
529630 |
caataatatggaagacattacccgcttttgtaatgtctatgttgatttggatttccaggtacttttcct |
529698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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