View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_low_3 (Length: 1085)

Name: NF10110_2D_low_3
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_low_3
NF10110_2D_low_3
[»] chr7 (1 HSPs)
chr7 (438-1071)||(32794655-32795287)
[»] chr2 (2 HSPs)
chr2 (473-785)||(14151232-14151544)
chr2 (989-1049)||(34377812-34377872)
[»] chr8 (4 HSPs)
chr8 (653-790)||(30274569-30274706)
chr8 (982-1059)||(34537067-34537144)
chr8 (510-584)||(30274767-30274841)
chr8 (74-123)||(22187332-22187381)
[»] chr6 (3 HSPs)
chr6 (347-447)||(1510990-1511090)
chr6 (989-1071)||(28629640-28629722)
chr6 (40-125)||(1510681-1510766)
[»] chr5 (3 HSPs)
chr5 (345-414)||(27041060-27041129)
chr5 (989-1059)||(34196770-34196840)
chr5 (656-693)||(34904652-34904689)
[»] chr1 (4 HSPs)
chr1 (40-125)||(30093508-30093593)
chr1 (345-451)||(30093205-30093311)
chr1 (656-693)||(38533671-38533708)
chr1 (656-693)||(38555889-38555926)
[»] scaffold0113 (1 HSPs)
scaffold0113 (40-125)||(3813-3898)


Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 438 - 1071
Target Start/End: Original strand, 32794655 - 32795287
Alignment:
Q  438 tttaggcgccttggatgcataatggaggtcgaatttcaggtttgggtcaatcgagcgaagtgattcaacatgcaagaattcattatcttgttgatcatga 537  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32794655 tttaggcgccttggatgtataatggaggtcgaatttcaggtttgggtcaatcgagcgaagtgattcaacatgcaagaattcattatcttgttgatcatga 32794754  T
Q  538 gagtaatagttggaatcacctaatgatttcatattatcttgatgatgcgatggttgaagatattctcaaaacacctctctttagtcaaatgacgaaagat 637  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||    
T  32794755 gagtaatagttggaatcaccaaatgatttcatattatcttgatgatgcgatggttgaagatattttcaaaacgcctttgtttagtcaaatgacgaaagat 32794854  T
Q  638 caattaatatagaatttagagaaaaatggtcattattctgttagaagtgcatatcgactgtgtatgaaagttatcgcggataattcatttctacaccgtt 737  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||| || ||||||||||||||||||||     
T  32794855 cagttaatatagaatttagagaaaaatggtcattattctgttagaagtgtgtatcgactgtgtatggaagttatcacgaataattcatttctacaccgtc 32794954  T
Q  738 tcggtaattggtctagtatttgaaaattaaaggttccttcgaaagtgagaaatctagttgaacaattgtttttactaaaacttttcatcataagtgattt 837  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32794955 ccggtaattggtctagtatttgaaaattaaaggttccttcgaaagtgagaaatctagttgaacaattgtttttactaaaacttttcatcataagtgatat 32795054  T
Q  838 tctattttcgcatgccaaaacatatcccaacttaaggaaatcgttggaccttttgaatattgagtcatgctaatttgtactcttaagacactataatagg 937  Q
    ||||||||| || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32795055 tctattttcacacgccaaaacatattgcaacttaaggaaatcgttggaccttttgaatattgagtcatgctaatttgtactcttaagacactataaaagg 32795154  T
Q  938 aatcaattaataaatgcatgagtttgttttttccaatgaagaggaaaaaagaagactaagcaactcggtgcttaaaaattgtaaaggagtcggcgaacaa 1037  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  32795155 aatcaattaataaatgcatgagttt-tttttttcgatgaagaggaaaaaagaagactaagcaactcggtgcctaaaaactgtagaggagtcggcgaacaa 32795253  T
Q  1038 gatataatttagtcgtggaggaaaagatgtccat 1071  Q
    ||||||||||||| ||||||||| ||||||||||    
T  32795254 gatataatttagttgtggaggaagagatgtccat 32795287  T

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Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 473 - 785
Target Start/End: Complemental strand, 14151544 - 14151232
Alignment:
Q  473 tcaggtttgggtcaatcgagcgaagtgattcaacatgcaagaattcattatcttgttgatcatgagagtaatagttggaatcacctaatgatttcatatt 572  Q
    |||||||| || || ||||| ||||| ||||||||  ||||||| || | |||| ||||| |||||| ||| |||||||| || |   |||| || ||||    
T  14151544 tcaggttttggacagtcgagtgaagttattcaacagtcaagaatccactctcttattgattatgagaataacagttggaaccatcagttgatctcgtatt 14151445  T
Q  573 atcttgatgatgcgatggttgaagatattctcaaaacacctctctttagtcaaatgacgaaagatcaattaatatagaatttagagaaaaatggtcatta 672  Q
    |  ||||| |||   ||||| |||  ||||| ||||| ||||| |||||| || ||  | | ||||||||||| | ||| ||||| |||||||||  |||    
T  14151444 actttgataatgatgtggttcaagtgattcttaaaacgcctctgtttagtaaagtggtggaggatcaattaatttggaaattagaaaaaaatggttgtta 14151345  T
Q  673 ttctgttagaagtgcatatcgactgtgtatgaaagttatcgcggataattcatttctacaccgtttcggtaattggtctagtatttgaaaattaaaggtt 772  Q
    ||| |||||||| |||||||||| || |||| ||||||| ||||||||||||||| | || |||   ||||||||||||||||| || || || |||||     
T  14151344 ttcggttagaagggcatatcgaccgtatatggaagttattgcggataattcatttttgcatcgtcctggtaattggtctagtatctggaatttgaaggtc 14151245  T
Q  773 ccttcgaaagtga 785  Q
    ||| |||||||||    
T  14151244 cctccgaaagtga 14151232  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 989 - 1049
Target Start/End: Original strand, 34377812 - 34377872
Alignment:
Q  989 aagactaagcaactcggtgcttaaaaattgtaaaggagtcggcgaacaagatataatttag 1049  Q
    |||||||||||||| ||||  |||||| | || ||||||||||||||||||||||||||||    
T  34377812 aagactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatataatttag 34377872  T

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Target: chr8 (Bit Score: 50; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 653 - 790
Target Start/End: Complemental strand, 30274706 - 30274569
Alignment:
Q  653 ttagagaaaaatggtcattattctgttagaagtgcatatcgactgtgtatgaaagttatcgcggataattcatttctacaccgtttcggtaattggtcta 752  Q
    |||||||||||||||| |||||||||||||||||  ||||| |||||||||  ||| || |||||||||||||||  ||| ||    ||||||||| |||    
T  30274706 ttagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcggataattcattttcacatcgccctggtaattgggcta 30274607  T
Q  753 gtatttgaaaattaaaggttccttcgaaagtgagaaat 790  Q
    ||||||| | ||| ||||| ||| ||||||||| ||||    
T  30274606 gtatttggagattgaaggtccctccgaaagtgaaaaat 30274569  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 982 - 1059
Target Start/End: Complemental strand, 34537144 - 34537067
Alignment:
Q  982 aaaaaagaagactaagcaactcggtgcttaaaaattgtaaaggagtcggcgaacaagatataatttagtcgtggagga 1059  Q
    |||||| |||||||||||| ||||||| |||||| | || |||||||||||||||||||| ||| |||| ||||||||    
T  34537144 aaaaaaaaagactaagcaattcggtgcctaaaaactctagaggagtcggcgaacaagatagaatctagttgtggagga 34537067  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 30274841 - 30274767
Alignment:
Q  510 caagaattcattatcttgttgatcatgagagtaatagttggaatcacctaatgatttcatattatcttgatgatg 584  Q
    |||||||||||| |||| |||| |||||||  ||||||||||| |||| | ||||||| |||||| ||||| |||    
T  30274841 caagaattcattctcttattgaccatgagaacaatagttggaaccaccaattgatttcgtattattttgataatg 30274767  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 22187332 - 22187381
Alignment:
Q  74 taattgattctattgagaaaatgttgaatgcattttggtggggaaatgga 123  Q
    ||||||||||||||||||| ||| ||||  ||||||||||||| ||||||    
T  22187332 taattgattctattgagaagatgatgaactcattttggtgggggaatgga 22187381  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 347 - 447
Target Start/End: Original strand, 1510990 - 1511090
Alignment:
Q  347 agttttgtgtggtgaagtatttttagtgcaaagaggattgttcgagatggtgctagatgaaaaattggcaatggtatgaacatcccaattttttaggcgc 446  Q
    ||||| || ||| |||||||||| ||||| | ||||||||| ||    || |||||||| |||||||| |||||||| ||||||||||||||| ||||||    
T  1510990 agtttcgtttggcgaagtattttcagtgcgaggaggattgtccgctcaggagctagatggaaaattggaaatggtataaacatcccaatttttgaggcgc 1511089  T
Q  447 c 447  Q
    |    
T  1511090 c 1511090  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 989 - 1071
Target Start/End: Complemental strand, 28629722 - 28629640
Alignment:
Q  989 aagactaagcaactcggtgcttaaaaattgtaaaggagtcggcgaacaagatataatttagtcgtggaggaaaagatgtccat 1071  Q
    |||||||||||||| ||||| |||||| |  | |||||||||||||||||||| ||| |||| | ||||||| ||| ||||||    
T  28629722 aagactaagcaacttggtgcctaaaaactccagaggagtcggcgaacaagatagaatctagttgcggaggaagagaggtccat 28629640  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 1510681 - 1510766
Alignment:
Q  40 tatgtcatgagtattttcttgctgccctctactctaattgattctattgagaaaatgttgaatgcattttggtggggaaatggagg 125  Q
    ||||||||||||||||||||  |||| || |  || ||||||||||||||||||||  | ||||  || |||||||||||||||||    
T  1510681 tatgtcatgagtattttcttattgccttcaaaccttattgattctattgagaaaattatcaatggcttctggtggggaaatggagg 1510766  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 27041129 - 27041060
Alignment:
Q  345 caagttttgtgtggtgaagtatttttagtgcaaagaggattgttcgagatggtgctagatgaaaaattgg 414  Q
    |||||||||| ||| | ||||||||||||||||||| |||||| |||   ||||||||||| ||||||||    
T  27041129 caagttttgtttggcgtagtatttttagtgcaaagatgattgtccgatcaggtgctagatggaaaattgg 27041060  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 989 - 1059
Target Start/End: Complemental strand, 34196840 - 34196770
Alignment:
Q  989 aagactaagcaactcggtgcttaaaaattgtaaaggagtcggcgaacaagatataatttagtcgtggagga 1059  Q
    |||||||||||||| ||||| |||||| |  | || ||||||||||||||||||||| ||| || ||||||    
T  34196840 aagactaagcaacttggtgcctaaaaactccagagtagtcggcgaacaagatataatctagccgcggagga 34196770  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 693
Target Start/End: Original strand, 34904652 - 34904689
Alignment:
Q  656 gagaaaaatggtcattattctgttagaagtgcatatcg 693  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  34904652 gagaaaaatggtaattattctgttagtagtgcatatcg 34904689  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 30093593 - 30093508
Alignment:
Q  40 tatgtcatgagtattttcttgctgccctctactctaattgattctattgagaaaatgttgaatgcattttggtggggaaatggagg 125  Q
    ||||| |||||  |||||||  |||| |||||||| |||||||||| || ||||||||| ||||  || |||||||||||||||||    
T  30093593 tatgttatgagccttttcttattgccttctactcttattgattctactgggaaaatgttaaatggtttctggtggggaaatggagg 30093508  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 30093311 - 30093205
Alignment:
Q  345 caagttttgtgtggtgaagtatttttagtgcaaagaggattgttcgagatggtgctagatgaaaaattggcaatggtatgaacatcccaattttttaggc 444  Q
    ||||||| |||||| ||||||||||||||||||| ||  |||| || || ||||  | ||| ||||| || |||||||| || |||||||||||  | ||    
T  30093311 caagtttcgtgtggcgaagtatttttagtgcaaaaagcgttgtccgtgaaggtgtcacatggaaaatcgggaatggtataaatatcccaattttcgaagc 30093212  T
Q  445 gccttgg 451  Q
    |||||||    
T  30093211 gccttgg 30093205  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 693
Target Start/End: Complemental strand, 38533708 - 38533671
Alignment:
Q  656 gagaaaaatggtcattattctgttagaagtgcatatcg 693  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  38533708 gagaaaaatggccattattctgtgagaagtgcatatcg 38533671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 693
Target Start/End: Complemental strand, 38555926 - 38555889
Alignment:
Q  656 gagaaaaatggtcattattctgttagaagtgcatatcg 693  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  38555926 gagaaaaatggccattattctgtgagaagtgcatatcg 38555889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 3898 - 3813
Alignment:
Q  40 tatgtcatgagtattttcttgctgccctctactctaattgattctattgagaaaatgttgaatgcattttggtggggaaatggagg 125  Q
    ||||||||||||||||||||  |||| ||||  || ||||||||||||||  ||||| | ||||  || |||||||||||| ||||    
T  3898 tatgtcatgagtattttcttattgccttctaaccttattgattctattgactaaatgctcaatgtcttctggtggggaaattgagg 3813  T

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