View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_31 (Length: 370)
Name: NF10110_2D_low_31
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 11231263 - 11231617
Alignment:
| Q |
1 |
atggtatccgggtctgtgatccgctgtgctagcctaatctgttgaggaacatgaatgccaagagctgaaggaaaccaaagttgttgtcgactgttgtata |
100 |
Q |
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| T |
11231263 |
atggtatccgagtctgtgatccactgtgctagcctaatctgttgaggaacatgaatgccaagagctgaaggaaaccaaagttgttgtcgactgtcgtata |
11231362 |
T |
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| Q |
101 |
tttgtgactgttgataccaaaaacgaaggcnnnnnnnn-cgtaaatatcagttagttgaattgagcattacttcggagagttaacaacatgcatcatgga |
199 |
Q |
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| T |
11231363 |
tttgtgactgttgataccaaaaacgaaggcaaaaaaaaacgtaaatatcagttagttgaattgagcataacttcggagagttaacagcatgcatcatgga |
11231462 |
T |
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| Q |
200 |
caaagagtacaatnnnnnnntaacatgcaagtgaaatattatcataaaattgagaatcatacacagaaatggataactcgttgcgatatgagaatgtgga |
299 |
Q |
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| T |
11231463 |
caaagagtacaataaaaaaataacatgcaagtgaaatattatcataaaattgagaatcatacacagaaatggataactcgttgcgatatgagaatgtgga |
11231562 |
T |
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| Q |
300 |
agtgtttggaattgaattgcatggattctgaatacaaaaattgagtttcattatct |
355 |
Q |
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| T |
11231563 |
agtgttt-gaattgaattgcatggattctgaatacaaaaattgagtttcattatct |
11231617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 11243389 - 11243523
Alignment:
| Q |
142 |
aaatatcagttagttgaattgagcattacttcggagagttaacaacatgcatcatggacaaagagtacaatnnnnnnntaacatgcaagtgaaatattat |
241 |
Q |
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| T |
11243389 |
aaatatcagttaattaaattgagcataacttatgagagttaacgacatgcatcatcgacaaagagtacaat-aaaaaatcacatgcaagtgaattagtat |
11243487 |
T |
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| Q |
242 |
cataaaattgagaatcatacacagaaatggataact |
277 |
Q |
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| T |
11243488 |
tagaaaattgagaatcatacacagaactggataact |
11243523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 11243595 - 11243635
Alignment:
| Q |
290 |
agaatgtggaagtgtttggaattgaattgcatggattctgaa |
331 |
Q |
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| T |
11243595 |
agaatgtggaagtgtttg-aattgaattgtatggattctgaa |
11243635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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