View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10110_2D_low_33 (Length: 365)
Name: NF10110_2D_low_33
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 830189 - 830524
Alignment:
| Q |
13 |
atactcccaaagtgttggaaccaatcacatgcataatccattcactcaaaatcagagtatagtatacaaattgacagagttagtaacttttaaaagttac |
112 |
Q |
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| T |
830189 |
atactcccaaagtgttggaaccaatcacatgcataatccattcactcaaaatcagagtatagtatacagattgacagagttagtaacttttaaaagttac |
830288 |
T |
|
| Q |
113 |
ctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
830289 |
ctgacgccagaaagagagaacattggatttaaccgcgcaaccaggtggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatg |
830388 |
T |
|
| Q |
213 |
taaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcttcacgagaatcagagcaaaaagcagagggaagagattgaagggatttgcgga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||| |
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| T |
830389 |
taaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcgtcacgagaatcggagccggaagcagagagaagagattgaagggatttgcgga |
830488 |
T |
|
| Q |
313 |
gggattcttcggtgctggccatgggagtagttgttg |
348 |
Q |
| |
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| T |
830489 |
gagattcttcggtgctggccatgggagtagttgttg |
830524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 297
Target Start/End: Original strand, 836247 - 836474
Alignment:
| Q |
70 |
tatagtatacaaattgacagagttagtaacttttaaaagttacctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatc |
169 |
Q |
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| T |
836247 |
tatagtataaaaaattacaggtttagtaacttttaaaacttacctgacgccaaaaagagagaacattgtatttaacagcggagccaggaggtccataatc |
836346 |
T |
|
| Q |
170 |
ataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcttcacgagaa |
269 |
Q |
| |
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| ||||||| || | |||| |||||||| |||||||| ||||||| | ||| |||| |||||| |||||||| |||| ||| ||||||| ||| ||| |
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| T |
836347 |
aaaaaaaccggcttcgccgccgtaaatttgaaacgacgagttgtaaaagaaacggcgtttaagtgtgttaacaactgatttacggaatgctttacgggaa |
836446 |
T |
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| Q |
270 |
tcagagcaaaaagcagagggaagagatt |
297 |
Q |
| |
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| |||| |||||||| ||||||||| |
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| T |
836447 |
ttggagccggaagcagagagaagagatt |
836474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 49234952 - 49235046
Alignment:
| Q |
138 |
gatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaag |
232 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||| ||||| | ||| |||||||| |
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| T |
49234952 |
gatttaacagcacaaccaggaggaccataatcataaaaaccagcaacaccgcgataaatcttaaacgaaggaatataaaacaaacggcgttcaag |
49235046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 271
Target Start/End: Original strand, 49825694 - 49825853
Alignment:
| Q |
111 |
acctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaa |
210 |
Q |
| |
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||||||||||| || ||||| ||||| |||||||| || ||| |||||||||||||||||||||||||||| ||||| | ||||| |||||| ||| || |
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| T |
49825694 |
acctgacgccaaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacgaaa |
49825793 |
T |
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| Q |
211 |
tgtaaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcttcacgagaatc |
271 |
Q |
| |
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| |||| || ||| |||||||| | || ||| ||||||||||| |||||||| ||||| |
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| T |
49825794 |
tataaacaa-acggcgttcaagcgcgttgttaacagattgacgaaaagcttcacgcgaatc |
49825853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 941835 - 941968
Alignment:
| Q |
138 |
gatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaagtgtat |
237 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| ||||| | ||||| |||||||| ||||| ||||| | ||| |||||||| |||| |
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| T |
941835 |
gatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaacgaaggaatataaaacaaacggcgttcaagcgtat |
941934 |
T |
|
| Q |
238 |
taacaacggattgacgaaatgcttcacgagaatc |
271 |
Q |
| |
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| ||| |||||||||||||||||||| ||||| |
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| T |
941935 |
tgttaacagattgacgaaatgcttcacgcgaatc |
941968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 50861745 - 50861624
Alignment:
| Q |
111 |
acctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaa |
210 |
Q |
| |
|
||||||||||| || ||||| || || |||||||| || |||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| |
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| T |
50861745 |
acctgacgccaaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcattaaaaccagcaacaccgcgataaatcttaaacgacggaa |
50861646 |
T |
|
| Q |
211 |
tgtaaaaaagacgacgttcaag |
232 |
Q |
| |
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| ||||| | ||| |||||||| |
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| T |
50861645 |
tataaaacaaacggcgttcaag |
50861624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 181
Target Start/End: Complemental strand, 47934461 - 47934430
Alignment:
| Q |
150 |
caaccaggaggaccataatcataaaaaccagc |
181 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47934461 |
caaccaggaggaccataatcataaaaaccagc |
47934430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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