View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_low_35 (Length: 352)

Name: NF10110_2D_low_35
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_low_35
NF10110_2D_low_35
[»] chr1 (10 HSPs)
chr1 (20-336)||(2288815-2289129)
chr1 (192-314)||(670986-671108)
chr1 (209-298)||(28239054-28239146)
chr1 (231-296)||(6326786-6326851)
chr1 (219-294)||(47569148-47569226)
chr1 (226-305)||(14508839-14508918)
chr1 (212-289)||(28231490-28231570)
chr1 (24-73)||(670808-670857)
chr1 (231-280)||(677216-677265)
chr1 (235-280)||(21159183-21159228)
[»] chr5 (1 HSPs)
chr5 (218-280)||(1717892-1717954)
[»] chr3 (1 HSPs)
chr3 (220-297)||(47924934-47925011)
[»] chr6 (2 HSPs)
chr6 (226-280)||(24934101-24934155)
chr6 (226-280)||(24941634-24941688)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 2288815 - 2289129
Alignment:
Q  20 tcttgttctgtaactatattgggagcataaatatttggttgaatgtaattgaattttaataccgacagatctcaaaaaactgaacaccaatttttggatc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  2288815 tcttgttctgtaactatattgggagcataaatatttggttgaatgtaattgaatt--aataccgacagatctcaaaaaactgaacaccaatttttggatc 2288912  T
Q  120 ggtgtagtttagttgtctaaagaagctgatagcttgtttaaattgagcagcaacacacaagccttaagttatatgatgatgtgtgtcataatcaggcatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2288913 ggtgtagtttagttgtctaaagaagctgatagcttgtttaaattgagcagcaacacacaagccttaagttatatgatgatgtgtgtcataatcaggcatg 2289012  T
Q  220 atgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgatttcgttatacaacaaaactatgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289013 atgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgatttcgttatacaacaaaactatgt 2289112  T
Q  320 catacatttcttgtctg 336  Q
    |||||||||||||||||    
T  2289113 catacatttcttgtctg 2289129  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 314
Target Start/End: Original strand, 670986 - 671108
Alignment:
Q  192 atgatgatgtgtgtcataatcaggcatgatgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagt 291  Q
    ||||||||||||| || |||||| |  ||| |||||||||||||||| | |||||||| ||||| ||||| ||||||||||||| ||||  ||||||| |    
T  670986 atgatgatgtgtgacacaatcagactcgatcttgttaacaatcatttcaaaatataaaccatagccttggtttacaagtctatctttgcacagcctgaat 671085  T
Q  292 atgatttcgttatacaacaaaac 314  Q
    |||||||  |||| |||||||||    
T  671086 atgattttcttatccaacaaaac 671108  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 28239146 - 28239054
Alignment:
Q  209 aatcaggcatgatgttgttaaca---atcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgattt 298  Q
    |||||||  ||||||||||||||   ||||||| |||||| ||||||||||||||| ||||||||||||| |||| |||||||  ||||||||    
T  28239146 aatcagggctgatgttgttaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgattt 28239054  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 6326786 - 6326851
Alignment:
Q  231 aatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgat 296  Q
    |||||||| |||||||||||||||||||||| || |||||||||| |||| ||| |||||||||||    
T  6326786 aatcatttcagaatataaatcataggcttggtttgcaagtctatctttgcagagtctgagtatgat 6326851  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 47569226 - 47569148
Alignment:
Q  219 gatgttgttaac---aatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatg 294  Q
    ||||||||||||   |||||||| |||||||||||||||||||||| ||||||||||||| |||| ||| |||| ||||    
T  47569226 gatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatg 47569148  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 14508839 - 14508918
Alignment:
Q  226 ttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgatttcgttata 305  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||  || |||| |||||| | ||||||    
T  14508839 ttaacaatcatttcagaatataaatcataggcttggtttacacgtctatctttgcatagtctgaatatgatattgttata 14508918  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 28231570 - 28231490
Alignment:
Q  212 caggcatgatgttgttaaca---atcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctga 289  Q
    ||||| ||||||||||||||   ||||||| ||||||||| |||||||||||| | ||||||||||| |||| ||| ||||    
T  28231570 caggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctga 28231490  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 670808 - 670857
Alignment:
Q  24 gttctgtaactatattgggagcataaatatttggttgaatgtaattgaat 73  Q
    |||| ||||||| ||| ||||||||||||||||||| |||||||||||||    
T  670808 gttcggtaactaaattaggagcataaatatttggttaaatgtaattgaat 670857  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 677265 - 677216
Alignment:
Q  231 aatcattttagaatataaatcataggcttggattacaagtctatccttgc 280  Q
    |||||||| |||||||||||||||||||||   |||||||||||| ||||    
T  677265 aatcatttcagaatataaatcataggcttgatgtacaagtctatctttgc 677216  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 21159183 - 21159228
Alignment:
Q  235 attttagaatataaatcataggcttggattacaagtctatccttgc 280  Q
    |||| |||||||||||||||||||||| ||| ||||||||| ||||    
T  21159183 atttcagaatataaatcataggcttggtttataagtctatctttgc 21159228  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 1717954 - 1717892
Alignment:
Q  218 tgatgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgc 280  Q
    ||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  1717954 tgatgttctttacaatcatttcagaatataaatcataggcttggtttacaagtctatctttgc 1717892  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 47924934 - 47925011
Alignment:
Q  220 atgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgatt 297  Q
    ||||| ||||||||||||| |||||| || |||||||||||  |||| |||||||| |||| |||  |||||||||||    
T  47924934 atgttcttaacaatcatttcagaatagaagtcataggcttgatttactagtctatctttgcagagggtgagtatgatt 47925011  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 24934155 - 24934101
Alignment:
Q  226 ttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgc 280  Q
    ||||||||||||| |||| |||||||| |||| || ||||||||| |||||||||    
T  24934155 ttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgc 24934101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 24941688 - 24941634
Alignment:
Q  226 ttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgc 280  Q
    ||||||||||||| |||| |||||||| |||| || ||||||||| |||||||||    
T  24941688 ttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgc 24941634  T

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