View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_39 (Length: 311)
Name: NF10110_2D_low_39
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 8044263 - 8044569
Alignment:
| Q |
1 |
tattaattcagcagctagctagcgcacagttttctctctatttttgtcataatatgattgtcacactctcataaccccacgactcttgtctaatctagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8044263 |
tattaattcagcagctagctagcgcacagttttctctctatttttgtcataatatgattgtcacactctcataaccccacgactcttgtctaatctagct |
8044362 |
T |
|
| Q |
101 |
actctcatactgaaaactcatacgttattggtcatatcatgagtcaaatttttaacaaaaaaccatgttcagtttgattagcatattatgcttcatatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8044363 |
actctcatactgaaaactcatacgttattggtcatatcatgagtcaaatttttaacaaaaaaccatgttcagtttgattagcataatatgcttcatatta |
8044462 |
T |
|
| Q |
201 |
ccgacgtcctac-----aattaaattaaaggcatatgtttggtggtccatcgagtcaagacatatctcaaatgtgtttgtgttattgttgtatctgatgt |
295 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8044463 |
ccgacgtcctacaattaaattaaattaaaggcatatgtttggtggtccatcgaatcaagacatatctcaaatgtgtttgtgttattgttgtatctggtgt |
8044562 |
T |
|
| Q |
296 |
ccatctc |
302 |
Q |
| |
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|| |||| |
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| T |
8044563 |
ccgtctc |
8044569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 8037264 - 8037355
Alignment:
| Q |
1 |
tattaattcagcagctagctagcgcacagttttctctctatttttgtcataatatgattgtcacactctcataaccccacgactcttgtctaat |
94 |
Q |
| |
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||||||||||||||||||| || | ||||||||| |||||||||| |||||||| | | || ||||| |||||||||||||||||||||| |
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| T |
8037264 |
tattaattcagcagctagc--gcatatagttttctcgtaatttttgtcacaatatgatcgactcattctcacaaccccacgactcttgtctaat |
8037355 |
T |
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