View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_low_4 (Length: 989)

Name: NF10110_2D_low_4
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_low_4
NF10110_2D_low_4
[»] chr3 (20 HSPs)
chr3 (11-780)||(20994814-20995581)
chr3 (11-529)||(20981655-20982176)
chr3 (780-963)||(20995685-20995868)
chr3 (78-454)||(20948577-20948953)
chr3 (42-351)||(20977352-20977664)
chr3 (140-354)||(45870364-45870578)
chr3 (73-254)||(20949465-20949649)
chr3 (162-390)||(45856786-45857014)
chr3 (789-888)||(50197100-50197199)
chr3 (146-395)||(2996370-2996613)
chr3 (890-963)||(20982921-20982995)
chr3 (734-780)||(20982652-20982698)
chr3 (690-771)||(50197103-50197185)
chr3 (162-223)||(45881814-45881875)
chr3 (820-885)||(50196879-50196944)
chr3 (75-118)||(45856699-45856742)
chr3 (290-348)||(476037-476095)
chr3 (297-351)||(8400529-8400583)
chr3 (257-319)||(21537064-21537126)
chr3 (146-191)||(45914200-45914245)
[»] chr4 (10 HSPs)
chr4 (77-398)||(3978048-3978369)
chr4 (690-780)||(23564107-23564196)
chr4 (684-777)||(9928784-9928882)
chr4 (269-388)||(36643650-36643769)
chr4 (734-780)||(1460400-1460446)
chr4 (734-780)||(2346185-2346231)
chr4 (690-724)||(11785030-11785064)
chr4 (734-776)||(23564360-23564402)
chr4 (780-833)||(1460397-1460450)
chr4 (789-878)||(11784979-11785068)
[»] chr7 (6 HSPs)
chr7 (11-351)||(44501196-44501534)
chr7 (806-919)||(8745861-8745972)
chr7 (300-384)||(6889108-6889192)
chr7 (690-776)||(35035254-35035341)
chr7 (294-384)||(14677133-14677223)
chr7 (734-776)||(23972409-23972451)
[»] chr5 (4 HSPs)
chr5 (170-390)||(38142048-38142268)
chr5 (68-112)||(7976615-7976659)
chr5 (294-384)||(17667126-17667216)
chr5 (791-861)||(42042255-42042325)
[»] chr1 (4 HSPs)
chr1 (780-919)||(3371585-3371721)
chr1 (806-888)||(25685698-25685780)
chr1 (734-780)||(30602344-30602390)
chr1 (690-723)||(10645792-10645825)
[»] scaffold0549 (2 HSPs)
scaffold0549 (749-780)||(1064-1095)
scaffold0549 (749-780)||(3154-3185)
[»] chr8 (1 HSPs)
chr8 (543-598)||(32884610-32884665)
[»] chr6 (1 HSPs)
chr6 (749-780)||(11339965-11339996)


Alignment Details
Target: chr3 (Bit Score: 695; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 11 - 780
Target Start/End: Original strand, 20994814 - 20995581
Alignment:
Q  11 ctgagatgaaaataagctaggaggaatttgcgcaatgtcacaagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatcttt 110  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20994814 ctgaaatgaaaataagctatgaggaatttgcgcaatgtcacaagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatcttt 20994913  T
Q  111 ttaagttgaggcacaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtgg 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20994914 ttaagttgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtgg 20995013  T
Q  211 tgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995014 tgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaac 20995113  T
Q  311 agcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaact 410  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995114 agcgtctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaact 20995213  T
Q  411 ttctttgtcggctgcggcggaatcattatctcatcctctgaatttgacatttggatatatacctagtagaaaaaggttgaaaccgttaaatgtgcttgga 510  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  20995214 ttcttcgtcggcggcggcggaatcatgatctcatcctctgaattagacatttgg--atatacctagtagaaaaaggttgaaaccgttaaatgtgcttgga 20995311  T
Q  511 tttcatgccaaaagttagctcaacagtcctgaaacctaagcaatgtaggacaaataacaaatgacgaacatttttaaaaccaacttcagcatccactctc 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||    
T  20995312 tttcatgccaaaagttagctcaacagtcctgaaacctaagcaatgtaggacaaataacaaacgacgaacatttttaaaaccaacttcaacacccactctc 20995411  T
Q  611 acgcctagtgtggacctgggtgcaatctttaacccggctctgaatgagcttgaattttatcccagaagctatctaaaaaatgagggtactcaaccatatt 710  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  20995412 acgcttagtgtgggcctgggtgcaatctttaacccggctctgaatgagcttgaatcttatcccagaagctagctaaaaaatgagggtactcaaccatatt 20995511  T
Q  711 tatacactcaacagggaaccatatgagcaatgtggaataaataacaaactacaaacaactttaaaaccaa 780  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995512 tatacactcaacatggaaccatatgagcaatgtggaataaataacaaactacaaacaactttaaaaccaa 20995581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Original strand, 20981655 - 20982176
Alignment:
Q  11 ctgagatgaaaataagctaggaggaatttgcgcaatgtcacaagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatcttt 110  Q
    |||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20981655 ctgaaatgaaaataggctatgaggaatttgcgcaatgtcacaattgacacaaagttgtaaccgctggacattgtgtgaaatagcgtaattcacaatcttt 20981754  T
Q  111 ttaagttgaggcacaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtgg 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20981755 ttaagttgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtgg 20981854  T
Q  211 tgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaac 310  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20981855 tgaatatcttgaaattacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatctttatatattggggataaaacacaagtttgaac 20981954  T
Q  311 agcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaact 410  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20981955 agcatgtttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaact 20982054  T
Q  411 ttctttgtcggctgcggcggaatcattatctcatcctctgaatttgacatttggatatatacctagta---gaaaaaggttgaaaccgttaaatgtgctt 507  Q
    ||||| ||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||     ||||||||||||| |||||||||||||    
T  20982055 ttcttcgtcagctgcggcggaatcgttatctcatccgctgaattagacatttggatatatacctagtaatcataaaaggttgaaactgttaaatgtgctt 20982154  T
Q  508 ggatttcatgccaaaagttagc 529  Q
     ||| |||| ||||||| ||||    
T  20982155 cgatctcatcccaaaagctagc 20982176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 780 - 963
Target Start/End: Original strand, 20995685 - 20995868
Alignment:
Q  780 aagttagttttgaagttgtttataggttgttattcgtcttacattgcacaggtttccgaactgttgaatgtataaatatgttcgactacgctcatccttt 879  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20995685 aagttagttttgaagttgtttataggttgttattcgtctcacattgcacaggtttccgaaccgttgaatgtataaatatgtttgactacgctcatccttt 20995784  T
Q  880 gagctagctcttttgcgatgagatcaaagctcattgaacagaaaacgggattattttgtgcaatagaagtaattgaggaatttc 963  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995785 gagctagctcttttgcgatgagatcaaagctcattgaacagaaaacgggattattttgtgcaatagaagtaattgaggaatttc 20995868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 78 - 454
Target Start/End: Complemental strand, 20948953 - 20948577
Alignment:
Q  78 acattgtgtgaaatagcgtaattcacaatctttttaagt---tgaggcacaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagagg 174  Q
    |||||||||  |||| |||||||||||||| ||||||||   |||||| | |||||  || ||||||||| |||||||||||  || | || ||||||||    
T  20948953 acattgtgtttaataccgtaattcacaatccttttaagtatgtgaggctctaagcgaacaatatgacgcttaaaatcaagagtgtgtattgcgatagagg 20948854  T
Q  175 aatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaag 274  Q
     ||||||||||||||||||||||||||| ||  |||||||||||||| | || | ||||||| |   ||| ||| ||||||  || |  |||||||| ||    
T  20948853 gatcacgaagagataaaatcttagacacaaacttggtgaatatcttgtatgttctaaagtctttgcaatgtaatctaagagtgggtatgcgtttccagag 20948754  T
Q  275 atccttatatattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagt 374  Q
    ||| |||||| ||| ||||||||||||||||||||| || | || || ||| | |||||||||||||| ||||||||| |||||||| || |||||  ||    
T  20948753 atcgttatatcttgtggataaaacacaagtttgaacggcgtgttgggcgtttaaaaaggagagaatgtaaaggataacgctttcgggtaaatcactcggt 20948654  T
Q  375 ctatcttcattttcacactcgctgctgagcttaactttctttgtcggctgcggcggaatcattatctcatcctctgaatt 454  Q
    |||||||| ||||| || ||   ||||||||||| |||||| |||||  |||| |||||| ||||||| || ||||||||    
T  20948653 ctatcttcgttttcgcaatc---gctgagcttaattttcttcgtcggtggcggtggaatcgttatctcgtcatctgaatt 20948577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 42 - 351
Target Start/End: Complemental strand, 20977664 - 20977352
Alignment:
Q  42 gcaatgtcacaagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatctttttaagt---tgaggcacaaagcggccattat 138  Q
    |||||||||| |||||||  |||| ||||  ||||||||||||||  ||||||||||||||||||| ||| ||||   |||||| | ||| | ||| |||    
T  20977664 gcaatgtcactagtgacattaagtcgtaatcgctggacattgtgtttaatagcgtaattcacaatcctttcaagtatgtgaggctctaagggaccaatat 20977565  T
Q  139 gacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctct 238  Q
    | |||| ||||||||||| ||  | || ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||    
T  20977564 ggcgcttaaaatcaagagcctctaatgtgatggaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagttctaaagtctct 20977465  T
Q  239 attatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagaga 338  Q
    |  ||  ||| ||||||| || |||||||| || ||||   |||||  || ||||||||  ||||||||||| || | || ||  || | |||||||||     
T  20977464 acaatataatctaagagctggtagacgttttcagagattggtatatcgtgtggataaaatgcaagtttgaacggcgttttgggcatttaaaaaggagagg 20977365  T
Q  339 atgtgaaggataa 351  Q
    || ||||||||||    
T  20977364 atatgaaggataa 20977352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 140 - 354
Target Start/End: Original strand, 45870364 - 45870578
Alignment:
Q  140 acgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctcta 239  Q
    ||||| |||||||||   ||| ||||||||||||||||| || |||||||||| | |||| || ||| |||||||||||||  |||| ||||||||   |    
T  45870364 acgcttaaaatcaagtttctgcagtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatca 45870463  T
Q  240 ttatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaa 339  Q
      ||||||| |||||| |||||||||||||||||||||| ||||| |||| |||||||| ||||||||||| || |||||||  |||  ||| || || |    
T  45870464 gaatgcaatataagagaaggaagacgtttccaaagatccgtatatcttggtgataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagta 45870563  T
Q  340 tgtgaaggataacac 354  Q
    |||||||||||||||    
T  45870564 tgtgaaggataacac 45870578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 20949649 - 20949465
Alignment:
Q  73 gctggacattgtgtgaaatagcgtaattcacaatctttttaagt---tgaggcacaaagcggccattatgacgctgaaaatcaagagactgaagtgagat 169  Q
    ||||||||||||||  ||||||||||||||||||| |||| |||   |||||| | || || ||| ||||| ||| |||||||||||  |  | || |||    
T  20949649 gctggacattgtgtttaatagcgtaattcacaatccttttgagtatgtgaggctctaaacgaccaatatgatgcttaaaatcaagagcttataatgtgat 20949550  T
Q  170 agaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaaga 254  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||| |||| | ||||||||||  ||||||| |||||    
T  20949549 agaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagttctaaagtctctacaatgcaatttaaga 20949465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 162 - 390
Target Start/End: Original strand, 45856786 - 45857014
Alignment:
Q  162 agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaa 261  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||||||| ||||||||      |  ||||||||||   ||||    
T  45856786 agtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaatatcttgaaagttcgaaagtcataggaacacaatgtaagatttggaa 45856885  T
Q  262 gacgtttccaaagatccttatatattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcggg 361  Q
    |  ||||||| |||||||| ||| ||||||| ||||  ||||||  ||| || ||||| | ||||||||| || || ||||| ||||||| |   ||  |    
T  45856886 gttgtttccagagatccttgtatcttggggacaaaatgcaagttccaaccgcgtctttagcgttcagaaaagacagtatgtggaggataatatagtcatg 45856985  T
Q  362 caagtcactgagtctatcttcattttcac 390  Q
     |||||||||||||||||||| |||||||    
T  45856986 taagtcactgagtctatcttcgttttcac 45857014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 789 - 888
Target Start/End: Original strand, 50197100 - 50197199
Alignment:
Q  789 ttgaagttgtttataggttgttattcgtcttacattgcacaggtttccgaactgttgaatgtataaatatgttcgactacgctcatcctttgagctagct 888  Q
    |||||||||||||||| |||||||| |||  ||||||| ||||||  ||||||||||| |||||||||||| |||| ||| |||||||||||| ||||||    
T  50197100 ttgaagttgtttatagtttgttatttgtcccacattgctcaggttcacgaactgttgagtgtataaatatggtcgagtaccctcatcctttgatctagct 50197199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 146 - 395
Target Start/End: Original strand, 2996370 - 2996613
Alignment:
Q  146 aaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgc 245  Q
    |||||| |||| ||| | ||| ||||||||||| | ||||||||||| ||||||||| ||| |||||||| ||||| |||| ||||||||  ||  ||||    
T  2996370 aaaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagttcgaaagtcggtagaatgc 2996469  T
Q  246 aatgtaagagcaggaagacgtttccaaagatccttata-tattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtga 344  Q
    |||  |||||||       ||||||| ||||||||| |   ||||||||||||  ||||||||||| || ||||| ||||||| ||| || || ||||||    
T  2996470 aatacaagagca-------gtttccatagatccttaaacctttggggataaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtga 2996562  T
Q  345 aggataacactttcgggcaagtcactgagtctatcttcattttcacactcg 395  Q
    ||||||||||  || |  ||||||||||| || |||| | |||||| ||||    
T  2996563 aggataacacaatcagttaagtcactgagcctgtctttaatttcactctcg 2996613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 890 - 963
Target Start/End: Original strand, 20982921 - 20982995
Alignment:
Q  890 ttttgcgatgagatcaaagctcattga-acagaaaacgggattattttgtgcaatagaagtaattgaggaatttc 963  Q
    ||||| ||||||||||||||||||| | | | ||||||| |||||||||||||||| ||||||||||||||||||    
T  20982921 ttttgggatgagatcaaagctcattcagaaacaaaacggcattattttgtgcaataaaagtaattgaggaatttc 20982995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 734 - 780
Target Start/End: Original strand, 20982652 - 20982698
Alignment:
Q  734 tgagcaatgtggaataaataacaaactacaaacaactttaaaaccaa 780  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||    
T  20982652 tgagcaatgtaggataaataacaaactacaaacaactttaaaaccaa 20982698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 690 - 771
Target Start/End: Complemental strand, 50197185 - 50197103
Alignment:
Q  690 atgagggtactcaaccatatttatacactcaaca----gggaaccatatgagcaatgtggaataaataacaaactacaaacaactt 771  Q
    |||||||||||| |||||||||||||||||||||    | |||||   |||||||||||| | ||||||||||||| |||||||||    
T  50197185 atgagggtactcgaccatatttatacactcaacagttcgtgaacc---tgagcaatgtgggacaaataacaaactataaacaactt 50197103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 45881814 - 45881875
Alignment:
Q  162 agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaa 223  Q
    |||| ||||||||||||||  |||||||||| ||| ||||| ||| ||||||||||||||||    
T  45881814 agtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaa 45881875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 885
Target Start/End: Original strand, 50196879 - 50196944
Alignment:
Q  820 acattgcacaggtttccgaactgttgaatgtataaatatgttcgactacgctcatcctttgagcta 885  Q
    ||||||| || ||||||| |||||||| ||||||||||||||  | ||| ||||||||||||||||    
T  50196879 acattgctcatgtttccgtactgttgagtgtataaatatgtttaaataccctcatcctttgagcta 50196944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 45856699 - 45856742
Alignment:
Q  75 tggacattgtgtgaaatagcgtaattcacaatctttttaagttg 118  Q
    |||||||||||||||||||| |||||||||| |||||| |||||    
T  45856699 tggacattgtgtgaaatagcataattcacaacctttttgagttg 45856742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 476095 - 476037
Alignment:
Q  290 ggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaagga 348  Q
    |||||||| |||||||||||| |||||||||| ||| | |||||||||  |||||||||    
T  476095 ggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtgtgaagga 476037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 8400529 - 8400583
Alignment:
Q  297 acacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataa 351  Q
    ||||||||||||| | |||||||||| ||||  ||||||||||||||| ||||||    
T  8400529 acacaagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataa 8400583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 21537126 - 21537064
Alignment:
Q  257 aggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaacagcttcttt 319  Q
    ||||||| ||||||||||||||||  || ||  |||||| | |||||||||||||||||||||    
T  21537126 aggaagatgtttccaaagatccttccatcttttggataagatacaagtttgaacagcttcttt 21537064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 45914200 - 45914245
Alignment:
Q  146 aaaatcaagagactgaagtgagatagaggaatcacgaagagataaa 191  Q
    ||||||||||| ||| || || ||||||||||||||||||||||||    
T  45914200 aaaatcaagagcctgcagcgatatagaggaatcacgaagagataaa 45914245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 1e-59; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 77 - 398
Target Start/End: Complemental strand, 3978369 - 3978048
Alignment:
Q  77 gacattgtgtgaaatagcgtaattcacaatctttttaagttgaggcacaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaa 176  Q
    |||||||||||||| ||| ||||||||||||||||  |||| |||| ||||||| || |||  ||||| |||||||||||  || |||| ||||||||||    
T  3978369 gacattgtgtgaaagagcataattcacaatcttttcgagtttaggctcaaagcgaccgttactacgcttaaaatcaagagcttgtagtgcgatagaggaa 3978270  T
Q  177 tcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagat 276  Q
    || |||||| ||||||  |||||||| ||| |||||||| ||||| |||  | |||||||  |  |||||||||||||| ||||||||||||||||||||    
T  3978269 tcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaagagtaggaagacgtttccaaagat 3978170  T
Q  277 ccttatatattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtct 376  Q
    |||||||| ||| ||||||||| ||||||||||| || |  |||||||| | ||| ||||| |||||||| ||||  ||||| || ||||| ||||||||    
T  3978169 ccttatatcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttcaggtaagtcgctgagtct 3978070  T
Q  377 atcttcattttcacactcgctg 398  Q
     ||||||||||| | |||||||    
T  3978069 gtcttcattttcgctctcgctg 3978048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 690 - 780
Target Start/End: Original strand, 23564107 - 23564196
Alignment:
Q  690 atgagggtactcaaccatatttatacactcaacagggaaccatatgagcaatgtggaataaataacaaactacaaacaactttaaaaccaa 780  Q
    |||||||||||||| |||| |||||||||||||||   |  || | |||||||||| |||||||||||||||||| |||||||||||||||    
T  23564107 atgagggtactcaagcatacttatacactcaacagcagaaaat-taagcaatgtgggataaataacaaactacaatcaactttaaaaccaa 23564196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 684 - 777
Target Start/End: Original strand, 9928784 - 9928882
Alignment:
Q  684 taaaaaatgagggtactcaaccatatttatacactcaaca---gggaaccatatgagcaatgtgg----aataaataacaaactacaaacaactttaaaa 776  Q
    |||||||| ||||||||||| |||||||||||||||||||    ||||  || ||||||||||||    ||| |||||||||||||||||||||| ||||    
T  9928784 taaaaaattagggtactcaaacatatttatacactcaacaacccggaa--atctgagcaatgtgggataaattaataacaaactacaaacaacttcaaaa 9928881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 36643650 - 36643769
Alignment:
Q  269 ccaaagatccttatatattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtca 368  Q
    |||||||| |||  || ||| ||| |||||||| ||||||||||| | ||||| || || ||| || | |||||||||||||||||  ||||| ||||||    
T  36643650 ccaaagatgcttccatcttgtggacaaaacacaggtttgaacagcatgtttggagtccaaaaatgataaaatgtgaaggataacacactcgggtaagtca 36643749  T
Q  369 ctgagtctatcttcattttc 388  Q
    || ||  | |||||||||||    
T  36643750 cttagcttgtcttcattttc 36643769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 734 - 780
Target Start/End: Complemental strand, 1460446 - 1460400
Alignment:
Q  734 tgagcaatgtggaataaataacaaactacaaacaactttaaaaccaa 780  Q
    |||||||||||  | ||||||||||||||||||||||| ||||||||    
T  1460446 tgagcaatgtgagacaaataacaaactacaaacaacttcaaaaccaa 1460400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 734 - 780
Target Start/End: Complemental strand, 2346231 - 2346185
Alignment:
Q  734 tgagcaatgtggaataaataacaaactacaaacaactttaaaaccaa 780  Q
    ||||| |||||||| ||| || |||||||||||||||||||||||||    
T  2346231 tgagcgatgtggaacaaacaataaactacaaacaactttaaaaccaa 2346185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 724
Target Start/End: Complemental strand, 11785064 - 11785030
Alignment:
Q  690 atgagggtactcaaccatatttatacactcaacag 724  Q
    |||||||||||||| ||||||||||||||||||||    
T  11785064 atgagggtactcaaacatatttatacactcaacag 11785030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 734 - 776
Target Start/End: Original strand, 23564360 - 23564402
Alignment:
Q  734 tgagcaatgtggaataaataacaaactacaaacaactttaaaa 776  Q
    |||||||||||| | ||||||||||||||||||||||| ||||    
T  23564360 tgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 23564402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 780 - 833
Target Start/End: Original strand, 1460397 - 1460450
Alignment:
Q  780 aagttagttttgaagttgtttataggttgttattcgtcttacattgcacaggtt 833  Q
    ||||| ||||||||||||||| ||| |||||||| |||| ||||||| ||||||    
T  1460397 aagttggttttgaagttgtttgtagtttgttatttgtctcacattgctcaggtt 1460450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 789 - 878
Target Start/End: Original strand, 11784979 - 11785068
Alignment:
Q  789 ttgaagttgtttataggttgttattcgtcttacattgcacaggtttccgaactgttgaatgtataaatatgttcgactacgctcatcctt 878  Q
    |||||||||||| ||| ||||| || |||  ||||| | ||||||  || |||||||| |||||||||||||| || ||| |||||||||    
T  11784979 ttgaagttgtttgtagtttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttgagtaccctcatcctt 11785068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 44501196 - 44501534
Alignment:
Q  11 ctgagatgaaaataagctaggaggaatttgcgcaatgtcacaagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatcttt 110  Q
    |||||||||||||| |||||| |||||||| ||| |||||  |  ||||| ||||  | || |||||||  |||||||||||||  ||||||||||| ||    
T  44501196 ctgagatgaaaatatgctaggcggaatttgtgcattgtcagcatggacactaagtcctgaccgctggactatgtgtgaaatagcacaattcacaatcctt 44501295  T
Q  111 ttaagt---tgaggcacaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatg 207  Q
    || |||   |||  | | ||||  ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| |||||||||||||     
T  44501296 ttgagtaggtgaaactccaagcaaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatt 44501392  T
Q  208 tggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttg 307  Q
    |  ||||||||||||||||  |||| |||  |  ||||  | |||| ||||||||||||||||||||||||||  || | ||||| ||||  ||||| ||    
T  44501393 tattgaatatcttgaaagtgtgaaaatctgaagaatgc--tataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctg 44501490  T
Q  308 aacagcttctttggtgttcagaaaggagagaatgtgaaggataa 351  Q
    |||||| | |||||  |||| ||| || || |||||||||||||    
T  44501491 aacagcgtttttggcattcaaaaaagacagtatgtgaaggataa 44501534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 806 - 919
Target Start/End: Complemental strand, 8745972 - 8745861
Alignment:
Q  806 ttgttattcgtcttacattgcacaggtttccgaactgttgaatgtataaatatgttcgactacgctcatcctttgagctagctcttttgcgatgagatca 905  Q
    |||||||  ||| ||||||| ||||||| ||| |||||||| ||||||||||||||||| ||  |||||||||| |||||   |||||| |||||||||     
T  8745972 ttgttatgtgtcctacattgtacaggttcccggactgttgagtgtataaatatgttcgagtatcctcatcctttaagcta--acttttgggatgagatcc 8745875  T
Q  906 aagctcattgaaca 919  Q
    ||||||||| ||||    
T  8745874 aagctcatttaaca 8745861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 6889192 - 6889108
Alignment:
Q  300 caagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcat 384  Q
    |||||||||||||| ||| |||||| || ||| ||||| |||||||| |||||||  ||||| ||||||||||| | ||||||||    
T  6889192 caagtttgaacagcgtctatggtgtccaaaaaagagagtatgtgaagaataacacaatcgggtaagtcactgaggcgatcttcat 6889108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 776
Target Start/End: Original strand, 35035254 - 35035341
Alignment:
Q  690 atgagggtactcaaccatatttatacactcaaca----gggaaccatatgagcaatgtggaataaataacaaactacaaacaactttaaaa 776  Q
    |||||| ||||||| |||||||||||||||||||    |  ||||   |||||||||||||| ||||||| ||||| ||||||||||||||    
T  35035254 atgaggctactcaaacatatttatacactcaacaaactgaaaacc---tgagcaatgtggaacaaataactaactataaacaactttaaaa 35035341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 14677223 - 14677133
Alignment:
Q  294 aaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcat 384  Q
    ||||| |||||| ||||| ||||||||||||| | ||| || | ||| |||||||||||||| | ||| ||||| || || ||||||||||    
T  14677223 aaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgttgggtaagtcgcttagcctatcttcat 14677133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 734 - 776
Target Start/End: Complemental strand, 23972451 - 23972409
Alignment:
Q  734 tgagcaatgtggaataaataacaaactacaaacaactttaaaa 776  Q
    |||||||||||| | |||||||||||||||||||| |||||||    
T  23972451 tgagcaatgtgggaaaaataacaaactacaaacaattttaaaa 23972409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 390
Target Start/End: Original strand, 38142048 - 38142268
Alignment:
Q  170 agaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttc 269  Q
    ||||||||||||||||| ||||| | ||  ||||||| || ||||||||   | ||| |||||||||  |  || |||| |||||||||||||| |||||    
T  38142048 agaggaatcacgaagagttaaaaccctatgcacgaatttgttgaatatcggtatagttcgaaagtctgaagaatccaatataagagcaggaagaagtttc 38142147  T
Q  270 caaagatccttatatattggggataaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcac 369  Q
    || |||||| |  || ||  ||| | ||   |||||  ||| || | ||| | ||||| ||||||||| ||||||||||||||||  || || ||||| |    
T  38142148 catagatccctccatcttaaggacagaattgaagttgtaactgcctgtttagcgttcaaaaaggagagtatgtgaaggataacacagtcaggtaagtcgc 38142247  T
Q  370 tgagtctatcttcattttcac 390  Q
    ||||||| |||||||||||||    
T  38142248 tgagtctgtcttcattttcac 38142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 7976615 - 7976659
Alignment:
Q  68 taactgctggacattgtgtgaaatagcgtaattcacaatcttttt 112  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||    
T  7976615 taaccgctggacattgtgtgaaatagcataattcacaatcctttt 7976659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 294 - 384
Target Start/End: Original strand, 17667126 - 17667216
Alignment:
Q  294 aaaacacaagtttgaacagcttctttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcat 384  Q
    ||||| |||||| ||||| ||||||||||||| | ||| || | ||| |||||||||||||| ||||| ||||  || || ||||||||||    
T  17667126 aaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgtcgggtaagttgcttagcctatcttcat 17667216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 791 - 861
Target Start/End: Original strand, 42042255 - 42042325
Alignment:
Q  791 gaagttgtttataggttgttattcgtcttacattgcacaggtttccgaactgttgaatgtataaatatgtt 861  Q
    |||||||||||||| ||||| || |||  |||||||| ||||| ||  |||||||| ||||||||||||||    
T  42042255 gaagttgtttatagtttgttgttagtcacacattgcaaaggttcccagactgttgagtgtataaatatgtt 42042325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 780 - 919
Target Start/End: Original strand, 3371585 - 3371721
Alignment:
Q  780 aagttagttttgaagttgtttataggttgttattcgtcttacattgcacaggtttccgaactgttgaatgtataaatatgttcgactacgctcatccttt 879  Q
    ||||| |||||| |||||||||||| |||||  | |||| | ||||| | |||| |||||||||||| |||||| | ||| | || ||| |||||| |||    
T  3371585 aagttggttttgtagttgtttatagtttgtttctggtctcatattgctcgggtt-ccgaactgttgagtgtatacacatgcttgagtaccctcatctttt 3371683  T
Q  880 gagctagctcttttgcgatgagatcaaagctcattgaaca 919  Q
    ||| |||  |||||| ||||||||| ||||||||| ||||    
T  3371684 gaggtag--cttttgggatgagatccaagctcatttaaca 3371721  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 806 - 888
Target Start/End: Original strand, 25685698 - 25685780
Alignment:
Q  806 ttgttattcgtcttacattgcacaggtttccgaactgttgaatgtataaatatgttcgactacgctcatcctttgagctagct 888  Q
    |||||||| |||| ||||||  ||| |||| ||  |||||| |||||||||||||| || ||| |||||| ||||||||||||    
T  25685698 ttgttatttgtctcacattgttcagatttctgagttgttgagtgtataaatatgtttgaatactctcatcatttgagctagct 25685780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 734 - 780
Target Start/End: Complemental strand, 30602390 - 30602344
Alignment:
Q  734 tgagcaatgtggaataaataacaaactacaaacaactttaaaaccaa 780  Q
    |||| |||||| || ||||||||||||||||||||||| ||||||||    
T  30602390 tgagtaatgtgaaacaaataacaaactacaaacaacttcaaaaccaa 30602344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 723
Target Start/End: Complemental strand, 10645825 - 10645792
Alignment:
Q  690 atgagggtactcaaccatatttatacactcaaca 723  Q
    |||||||||||||| |||||||||||||||||||    
T  10645825 atgagggtactcaaacatatttatacactcaaca 10645792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 780
Target Start/End: Complemental strand, 1095 - 1064
Alignment:
Q  749 aaataacaaactacaaacaactttaaaaccaa 780  Q
    ||||||||||||||||||||||||||||||||    
T  1095 aaataacaaactacaaacaactttaaaaccaa 1064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 780
Target Start/End: Complemental strand, 3185 - 3154
Alignment:
Q  749 aaataacaaactacaaacaactttaaaaccaa 780  Q
    ||||||||||||||||||||||||||||||||    
T  3185 aaataacaaactacaaacaactttaaaaccaa 3154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 32884610 - 32884665
Alignment:
Q  543 aacctaagcaatgtaggacaaataacaaatgacgaacatttttaaaaccaacttca 598  Q
    ||||| ||||||||  |||||||||||||  ||||||||||| |||||||||||||    
T  32884610 aacctgagcaatgtgagacaaataacaaactacgaacattttcaaaaccaacttca 32884665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 780
Target Start/End: Complemental strand, 11339996 - 11339965
Alignment:
Q  749 aaataacaaactacaaacaactttaaaaccaa 780  Q
    ||||||||||||||||||||||||||||||||    
T  11339996 aaataacaaactacaaacaactttaaaaccaa 11339965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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