View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10110_2D_low_42 (Length: 299)

Name: NF10110_2D_low_42
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10110_2D_low_42
NF10110_2D_low_42
[»] chr2 (4 HSPs)
chr2 (8-253)||(3220325-3220570)
chr2 (8-247)||(12504755-12504994)
chr2 (8-247)||(14680932-14681171)
chr2 (104-246)||(39587451-39587607)
[»] scaffold0014 (2 HSPs)
scaffold0014 (8-247)||(173548-173787)
scaffold0014 (8-247)||(143754-143993)
[»] chr8 (3 HSPs)
chr8 (8-247)||(44197932-44198171)
chr8 (15-247)||(20793481-20793713)
chr8 (8-247)||(23928980-23929219)
[»] chr7 (7 HSPs)
chr7 (8-247)||(48513447-48513686)
chr7 (15-251)||(3718237-3718472)
chr7 (8-247)||(42105180-42105419)
chr7 (8-247)||(48727889-48728128)
chr7 (153-205)||(34529808-34529860)
chr7 (153-205)||(45574882-45574934)
chr7 (156-205)||(17990443-17990492)
[»] chr6 (1 HSPs)
chr6 (8-247)||(29651809-29652048)
[»] chr5 (4 HSPs)
chr5 (8-247)||(36678978-36679217)
chr5 (8-247)||(36662561-36662800)
chr5 (14-251)||(23203822-23204059)
chr5 (24-251)||(43560199-43560431)
[»] chr3 (4 HSPs)
chr3 (8-247)||(38327706-38327945)
chr3 (8-251)||(55488679-55488922)
chr3 (8-247)||(46073387-46073624)
chr3 (153-205)||(35029014-35029066)
[»] chr1 (4 HSPs)
chr1 (8-247)||(52609025-52609264)
chr1 (8-251)||(52887737-52887984)
chr1 (8-251)||(29886988-29887230)
chr1 (147-251)||(13728701-13728805)
[»] scaffold1284 (1 HSPs)
scaffold1284 (24-251)||(143-375)
[»] chr4 (1 HSPs)
chr4 (18-205)||(56288593-56288780)
[»] scaffold0318 (1 HSPs)
scaffold0318 (15-175)||(19891-20051)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 3220325 - 3220570
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3220325 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacaaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 3220424  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220425 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 3220524  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactcgtggtt 253  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3220525 agccttcgctgctttcgcgattcgttctccttcgccactcgtggtt 3220570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 12504755 - 12504994
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  12504755 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 12504854  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12504855 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 12504954  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  12504955 cgccttcgctactttcgcgattcgttctccttcgccactc 12504994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 14681171 - 14680932
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  14681171 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 14681072  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14681071 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 14680972  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  14680971 cgccttcgctactttcgcgattcgttctccttcgccactc 14680932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 39587451 - 39587607
Alignment:
Q  104 ttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaag--------------aacaagattctttgctctgcacct 189  Q
    |||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||              |||||||||| |||||||||||||    
T  39587451 ttatctcacagatgcagcgcgcgaagctggaacggagaatcttgcttacactgaatgggaagaacaagattcgaagaacaagattcattgctctgcacct 39587550  T
Q  190 ggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 246  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| |||||||||    
T  39587551 ggattctttcaacgatttcgccttcgctactttcgcgattcgttctcattcgccact 39587607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 173548 - 173787
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  173548 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 173647  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  173648 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 173747  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  173748 cgccttcgctactttcgcgattcgttctccttcgccactc 173787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 143754 - 143993
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||||||| ||||||||    
T  143754 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgagattccatcggtttat 143853  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |    
T  143854 ctcacagatgcagcgtgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctcagcacctggattctttcaacgatct 143953  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||| ||||||||||||| ||||||    
T  143954 cgccttcgctactttcgcggttcgttctccttctccactc 143993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 44197932 - 44198171
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  44197932 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 44198031  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44198032 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 44198131  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  44198132 cgccttcgctactttcgcgattcgttctccttcgccactc 44198171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 20793481 - 20793713
Alignment:
Q  15 aactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||| ||||||||||||||    
T  20793481 aactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccacaggtttatctcacag 20793580  T
Q  115 atgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttc 214  Q
    ||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  20793581 atgcagcgcgcgaagctggaacggagaatcatgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatatcgccttc 20793680  T
Q  215 actgctttcgcgattcgttctccttcgccactc 247  Q
     || |||||||||||||||||||||||||||||    
T  20793681 gctactttcgcgattcgttctccttcgccactc 20793713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 23929219 - 23928980
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||| | |||||    
T  23929219 tgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccactgatttat 23929120  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| | || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  23929119 ctcacagatgcagcgcgcgaagctggaacggataatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgaattctttcaacgattt 23929020  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  23929019 cgccttcgctactttcgcgattcgttctccttcgccactc 23928980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 48513686 - 48513447
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  48513686 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 48513587  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48513586 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 48513487  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  48513486 cgccttcgctactttcgcgattcgttctccttcgccactc 48513447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 3718472 - 3718237
Alignment:
Q  15 aactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacag 114  Q
    ||||||||| |||||||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||    
T  3718472 aactacctttaatggaagcaacaagtcgaaggtgttct-cgcggaacgaagatggtgaaatttgtgatttcacctgagattccaccggtttatctcacag 3718374  T
Q  115 atgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttc 214  Q
    ||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  3718373 atgcagcacgcgaagctggaacgaagaatcctgcttacaccgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattttgccttc 3718274  T
Q  215 actgctttcgcgattcgttctccttcgccactcgtgg 251  Q
     || |||||||||||||||||||||||||||||||||    
T  3718273 gctactttcgcgattcgttctccttcgccactcgtgg 3718237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 42105180 - 42105419
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||||    
T  42105180 tgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgtggaacgaagatggtgaaatttgtgatttcacctgagattccaccggtttat 42105279  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42105280 ctcacagatgcagcgcgcgaagctggaaccgagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 42105379  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||  || |||||||||||||||||||||||||||||    
T  42105380 cgccttggctactttcgcgattcgttctccttcgccactc 42105419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 48728128 - 48727889
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||    
T  48728128 tgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgagattccaccggtttat 48728029  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||| ||| ||||||| |||| |||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48728028 ctcacacatgcagcgcgcaaagctggaacggagaatcctgcttacactaaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 48727929  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  48727928 cgccttcgctactttcgcgattcgttctccttcgccactc 48727889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 34529860 - 34529808
Alignment:
Q  153 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 205  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  34529860 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 34529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 45574934 - 45574882
Alignment:
Q  153 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 205  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  45574934 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 45574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 17990443 - 17990492
Alignment:
Q  156 gaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 205  Q
    ||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  17990443 gaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 17990492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 29651809 - 29652048
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  29651809 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 29651908  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29651909 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 29652008  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  29652009 cgccttcgctactttcgcgattcgttctccttcgccactc 29652048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 36679217 - 36678978
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  36679217 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 36679118  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36679117 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 36679018  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  36679017 cgccttcgctactttcgcgattcgttctccttcgccactc 36678978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 36662561 - 36662800
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  36662561 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 36662660  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36662661 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 36662760  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     | |||| || |||||||||||||||||||||||||||||    
T  36662761 cggcttcgctactttcgcgattcgttctccttcgccactc 36662800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 23204059 - 23203822
Alignment:
Q  14 gaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcaca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||| |    
T  23204059 gaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgagattccaccggtttatctcata 23203960  T
Q  114 gatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagcctt 213  Q
     ||| ||| || | |||||||||| |||| |||| ||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||||    
T  23203959 aatgcagcacgtggagcaggaacggagaatcctgtttacactgaatgggaagaacacgattaattgctctacacctggattctttcaacgatttcgcctt 23203860  T
Q  214 cactgctttcgcgattcgttctccttcgccactcgtgg 251  Q
      || |||||||||||||||||||||||||||||||||    
T  23203859 tgctactttcgcgattcgttctccttcgccactcgtgg 23203822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 43560199 - 43560431
Alignment:
Q  24 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 123  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  43560199 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 43560297  T
Q  124 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 217  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  43560298 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 43560397  T
Q  218 gctttcgcgattcgttctccttcgccactcgtgg 251  Q
     |||||||||||||||||||||||||||||||||    
T  43560398 actttcgcgattcgttctccttcgccactcgtgg 43560431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 38327945 - 38327706
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  38327945 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 38327846  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38327845 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 38327746  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  38327745 cgccttcgctactttcgcgattcgttctccttcgccactc 38327706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 55488679 - 55488922
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||    
T  55488679 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgagattccaccggtttat 55488778  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| ||| |||||||| |||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  55488779 ctcacagatgcagcacgcgaagctggaacggagaattctgcttacactgaatgggaagaacaagattcattgctctgcacctgggttctttcaacgattt 55488878  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactcgtgg 251  Q
     |||||| || |||||||| ||||||||||||||||||||||||    
T  55488879 cgccttcgctactttcgcggttcgttctccttcgccactcgtgg 55488922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 46073387 - 46073624
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | | |||||||||||||||||||| ||||||||  |||||||    
T  46073387 tgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatgttgaaatttgtgatttcacctgagattcca--ggtttat 46073484  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46073485 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 46073584  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || ||||||||||||||||||||| |||||||    
T  46073585 cgccttcgctactttcgcgattcgttctcctttgccactc 46073624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 35029066 - 35029014
Alignment:
Q  153 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 205  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  35029066 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 35029014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 52609264 - 52609025
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  52609264 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcacctgatattccaccggttttt 52609165  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52609164 ctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 52609065  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactc 247  Q
     |||||| || |||||||||||||||||||||||||||||    
T  52609064 cgccttcgctactttcgcgattcgttctccttcgccactc 52609025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 52887737 - 52887984
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||| |||||||||||||||||    
T  52887737 tgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaatgaagatggtgaaatttgtgatttcacctgagattccaccggtttat 52887836  T
Q  108 ctcacagatgaagcgcgcg----aagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacg 203  Q
    ||||||| || ||||||||    ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52887837 ctcacagttgcagcgcgcgcacgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacg 52887936  T
Q  204 atttagccttcactgctttcgcgattcgttctccttcgccactcgtgg 251  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||    
T  52887937 atttcgccttcactactttcgcgattcgttctccttcgccactcgtgg 52887984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 29886988 - 29887230
Alignment:
Q  8 tgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttat 107  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||| |||||||||||||||||    
T  29886988 tgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaatttgtgatttcgcctgagattccaccggtttat 29887087  T
Q  108 ctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgattt 207  Q
    |||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29887088 ctcaca-atgcagcgcgcgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattt 29887186  T
Q  208 agccttcactgctttcgcgattcgttctccttcgccactcgtgg 251  Q
      ||||| || |||||||||||||||||||||||||||||||||    
T  29887187 caccttcgctactttcgcgattcgttctccttcgccactcgtgg 29887230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 13728701 - 13728805
Alignment:
Q  147 gcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 246  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||| | ||||| |||| | |||| ||||||||||| ||||| || || || ||||    
T  13728701 gcttacaccgaatgggaagaacaagattctctcctttgcacatggattttatcaactatttcgtcttctctgctttcgcgtttcgtgcttctccgtcact 13728800  T
Q  247 cgtgg 251  Q
    |||||    
T  13728801 cgtgg 13728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 143 - 375
Alignment:
Q  24 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 123  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  143 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 241  T
Q  124 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 217  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  242 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 341  T
Q  218 gctttcgcgattcgttctccttcgccactcgtgg 251  Q
     |||||||||||||||||||||||||||||||||    
T  342 actttcgcgattcgttctccttcgccactcgtgg 375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 56288780 - 56288593
Alignment:
Q  18 taccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatg 117  Q
    |||||||||||||| ||||| |||||||| ||| | ||||  ||||| | |||||||  |||  |||| || |||||||||||||| |||||||| || |    
T  56288780 taccttcaatggaaacaacaggtcgaaggagttttgcgcggtacgaagatggtgaaacatgtcgtttcgccgcagattccaccggtgtatctcaccgacg 56288681  T
Q  118 aagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 205  Q
      || ||||  || |||||| |||| || || || || ||||||||||||||||||||| |||| || || |||||||| || |||||    
T  56288680 ctgctcgcgccgccggaacggagaatccggcgtataccgaatgggaagaacaagattctctgctgtgtacatggattctctccacgat 56288593  T

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Target: scaffold0318 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 20051 - 19891
Alignment:
Q  15 aactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacag 114  Q
    ||||||||  |||||||||| ||||| ||||||||  | || | ||  |||| |||||||||| || |||| || || ||||||||||||||||||| |     
T  20051 aactacctctaatggaagcagcaagtagaaggtgtgttgcgaggaagaaaaatggtgaaatttatggtttctccacaaattccaccggtttatctcaaac 19952  T
Q  115 atgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattc 175  Q
    |||  || |||||||| |||| | | || ||||| ||  ||||||||||||| ||||||||    
T  19951 atgtcgctcgcgaagctggaatggaaaaccctgcgtattctgaatgggaagagcaagattc 19891  T

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