View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_43 (Length: 299)
Name: NF10110_2D_low_43
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 38378428 - 38378708
Alignment:
| Q |
18 |
tcaacatgaaacaaaaccacaagaagaaataatggtcattttgagccaaacaattcgaaattcaaccaacctttaaaggatcttaaa-acaacctaagag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
38378428 |
tcaacatgaaacaaaaccacaagaagaaataatggtcattttgagccaaacaatccgaaattcaaccaacctttaaaggatcttaaacacaacctatgag |
38378527 |
T |
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| Q |
117 |
tgttggaccatatcttgtggatcacaagaccaaaaccaccacacatgattctaaaacccataatcacatcacatgatctcaaatcttgaagtggaaagac |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38378528 |
tgttggaccatatcttgtggatcacaagatcaaaaccaccacacatgattctcaaacccataatcacatcacatgatctcaaatcttgaagtggaaagac |
38378627 |
T |
|
| Q |
217 |
aaaattgtaactcaaattgaatataatgagctagggatcaaacacatcaaaaaccaagaaacccatacacgattcatatca |
297 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38378628 |
aaaattgtaactcaaattgaatacaatgagctagggatcaaacacatcaaaaaccaagaaacccatacacgattcacatca |
38378708 |
T |
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