View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_50 (Length: 277)
Name: NF10110_2D_low_50
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 21596639 - 21596823
Alignment:
| Q |
94 |
atgccaccttagatcttagcagtacagtacttgtttcctctaccaacacaacagaacagt--------------------tttctgtttcgtaacttcat |
173 |
Q |
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| T |
21596639 |
atgccaccttagatcttagcagtacagtacttgtttcctctaccaacacaacagaacagtgagtgcctcttacataaaattttctgtttcgtaacttcat |
21596738 |
T |
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| Q |
174 |
cttcttcttcaactcttgttacaaactttactcattcatgattcatccactcgtgcgtgcgttctagttcatgttaccacatcac |
258 |
Q |
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| T |
21596739 |
cttcttcttcaactcttgttacaaactttactcattcatgattcatccactcgtgcgtgcgttctagttcatgttaccacatcac |
21596823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21596511 - 21596604
Alignment:
| Q |
1 |
cttaagtcgaatttgaatgaccataatctataattatgaatgtcacgtgatgttcatatggtttattattgtatgaataaacgtgtaggaccca |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
21596511 |
cttaagtcgaatttgaatgaccataatctataattatgaatgtcacgtgatgttcatatggtttattattctatgaataaacatgtaggaccca |
21596604 |
T |
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