View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_57 (Length: 273)
Name: NF10110_2D_low_57
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 8043364 - 8043139
Alignment:
| Q |
22 |
atttctcatttcacagctcttctcaaaaatataaaaactt-gttcatatataattccttccttgcatatatatagctaatcatggctttctctaagtttc |
120 |
Q |
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| T |
8043364 |
atttctcatttcacagctcttctcaaaaatataaaaacttagttcatatata-ttccttccttgcatatatatagctaatcatggctttctctaagtttc |
8043266 |
T |
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| Q |
121 |
tagctgcttcccttcttgcatcactcctccttcttcatcttgttgatgcaacagatcaatcagtatgtatttaatttaaactttaattattaattcatgg |
220 |
Q |
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| T |
8043265 |
tagctgcttcccttcttgcatcactcctccttcttcatcttgttgatgcaacagatcaatcagtatgtatttaatttaaactttaattattaattcatgg |
8043166 |
T |
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| Q |
221 |
tttgcatacatgaatgtaacagagtta |
247 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
8043165 |
tttgcatacatgaacgtaacagagtta |
8043139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 8035886 - 8035795
Alignment:
| Q |
93 |
tagctaatcatggctttctctaagtttctagctgcttcccttcttgcatca---ctcctccttcttcatcttgttgatgcaacagatcaatc |
181 |
Q |
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||||||||||||||| |||||||| |||| | ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
8035886 |
tagctaatcatggctatctctaagcttcttgttgcttcccttcttgcatcatttctcctttttcatcatcttgttgatgcaacagatcaatc |
8035795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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