View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_6 (Length: 959)
Name: NF10110_2D_low_6
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_6 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 438 - 946
Target Start/End: Original strand, 32794655 - 32795163
Alignment:
| Q |
438 |
tttaggcgccttggatgcataatggaggtcgaatttcaggtttgggtcaatcgagcgaagtgattcaacatgcaagaattcattatcttgttgatcatga |
537 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32794655 |
tttaggcgccttggatgtataatggaggtcgaatttcaggtttgggtcaatcgagcgaagtgattcaacatgcaagaattcattatcttgttgatcatga |
32794754 |
T |
|
| Q |
538 |
gagtaatagttggaatcacctaatgatttcatattatcttgatgatgcgatggttgaagatattctcaaaacacctctctttagtcaaatgacgaaagat |
637 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |
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| T |
32794755 |
gagtaatagttggaatcaccaaatgatttcatattatcttgatgatgcgatggttgaagatattttcaaaacgcctttgtttagtcaaatgacgaaagat |
32794854 |
T |
|
| Q |
638 |
caattaatatagaatttagagaaaaatggtcattattctgttagaagtgcatatcgactgtgtatgaaagttatcgcggataattcatttctacaccgtt |
737 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
32794855 |
cagttaatatagaatttagagaaaaatggtcattattctgttagaagtgtgtatcgactgtgtatggaagttatcacgaataattcatttctacaccgtc |
32794954 |
T |
|
| Q |
738 |
tcggtaattggtctagtatttgaaaattaaaggttccttcgaaagtgagaaatctagttgaacaattgtttttactaaaacttttcatcataagtgattt |
837 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32794955 |
ccggtaattggtctagtatttgaaaattaaaggttccttcgaaagtgagaaatctagttgaacaattgtttttactaaaacttttcatcataagtgatat |
32795054 |
T |
|
| Q |
838 |
tctattttcgcatgccaaaacatatcccaacttaaggaaatcgttggaccttttgaatattgagtcatgctaatttgtactcttaagacactataatagg |
937 |
Q |
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| T |
32795055 |
tctattttcacacgccaaaacatattgcaacttaaggaaatcgttggaccttttgaatattgagtcatgctaatttgtactcttaagacactataaaagg |
32795154 |
T |
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| Q |
938 |
aatcaatta |
946 |
Q |
| |
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||||||||| |
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| T |
32795155 |
aatcaatta |
32795163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 473 - 785
Target Start/End: Complemental strand, 14151544 - 14151232
Alignment:
| Q |
473 |
tcaggtttgggtcaatcgagcgaagtgattcaacatgcaagaattcattatcttgttgatcatgagagtaatagttggaatcacctaatgatttcatatt |
572 |
Q |
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|||||||| || || ||||| ||||| |||||||| ||||||| || | |||| ||||| |||||| ||| |||||||| || | |||| || |||| |
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| T |
14151544 |
tcaggttttggacagtcgagtgaagttattcaacagtcaagaatccactctcttattgattatgagaataacagttggaaccatcagttgatctcgtatt |
14151445 |
T |
|
| Q |
573 |
atcttgatgatgcgatggttgaagatattctcaaaacacctctctttagtcaaatgacgaaagatcaattaatatagaatttagagaaaaatggtcatta |
672 |
Q |
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| T |
14151444 |
actttgataatgatgtggttcaagtgattcttaaaacgcctctgtttagtaaagtggtggaggatcaattaatttggaaattagaaaaaaatggttgtta |
14151345 |
T |
|
| Q |
673 |
ttctgttagaagtgcatatcgactgtgtatgaaagttatcgcggataattcatttctacaccgtttcggtaattggtctagtatttgaaaattaaaggtt |
772 |
Q |
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||| |||||||| |||||||||| || |||| ||||||| ||||||||||||||| | || ||| ||||||||||||||||| || || || ||||| |
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| T |
14151344 |
ttcggttagaagggcatatcgaccgtatatggaagttattgcggataattcatttttgcatcgtcctggtaattggtctagtatctggaatttgaaggtc |
14151245 |
T |
|
| Q |
773 |
ccttcgaaagtga |
785 |
Q |
| |
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||| ||||||||| |
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| T |
14151244 |
cctccgaaagtga |
14151232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 653 - 790
Target Start/End: Complemental strand, 30274706 - 30274569
Alignment:
| Q |
653 |
ttagagaaaaatggtcattattctgttagaagtgcatatcgactgtgtatgaaagttatcgcggataattcatttctacaccgtttcggtaattggtcta |
752 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||| || ||||||||||||||| ||| || ||||||||| ||| |
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| T |
30274706 |
ttagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcggataattcattttcacatcgccctggtaattgggcta |
30274607 |
T |
|
| Q |
753 |
gtatttgaaaattaaaggttccttcgaaagtgagaaat |
790 |
Q |
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||||||| | ||| ||||| ||| ||||||||| |||| |
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| T |
30274606 |
gtatttggagattgaaggtccctccgaaagtgaaaaat |
30274569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 30274841 - 30274767
Alignment:
| Q |
510 |
caagaattcattatcttgttgatcatgagagtaatagttggaatcacctaatgatttcatattatcttgatgatg |
584 |
Q |
| |
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|||||||||||| |||| |||| ||||||| ||||||||||| |||| | ||||||| |||||| ||||| ||| |
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| T |
30274841 |
caagaattcattctcttattgaccatgagaacaatagttggaaccaccaattgatttcgtattattttgataatg |
30274767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 22187332 - 22187381
Alignment:
| Q |
74 |
taattgattctattgagaaaatgttgaatgcattttggtggggaaatgga |
123 |
Q |
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||||||||||||||||||| ||| |||| ||||||||||||| |||||| |
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| T |
22187332 |
taattgattctattgagaagatgatgaactcattttggtgggggaatgga |
22187381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 447
Target Start/End: Original strand, 1510990 - 1511090
Alignment:
| Q |
347 |
agttttgtgtggtgaagtatttttagtgcaaagaggattgttcgagatggtgctagatgaaaaattggcaatggtatgaacatcccaattttttaggcgc |
446 |
Q |
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||||| || ||| |||||||||| ||||| | ||||||||| || || |||||||| |||||||| |||||||| ||||||||||||||| |||||| |
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| T |
1510990 |
agtttcgtttggcgaagtattttcagtgcgaggaggattgtccgctcaggagctagatggaaaattggaaatggtataaacatcccaatttttgaggcgc |
1511089 |
T |
|
| Q |
447 |
c |
447 |
Q |
| |
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| |
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| T |
1511090 |
c |
1511090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 1510681 - 1510766
Alignment:
| Q |
40 |
tatgtcatgagtattttcttgctgccctctactctaattgattctattgagaaaatgttgaatgcattttggtggggaaatggagg |
125 |
Q |
| |
|
|||||||||||||||||||| |||| || | || |||||||||||||||||||| | |||| || ||||||||||||||||| |
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| T |
1510681 |
tatgtcatgagtattttcttattgccttcaaaccttattgattctattgagaaaattatcaatggcttctggtggggaaatggagg |
1510766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 27041129 - 27041060
Alignment:
| Q |
345 |
caagttttgtgtggtgaagtatttttagtgcaaagaggattgttcgagatggtgctagatgaaaaattgg |
414 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||||| |||||||| |
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|
| T |
27041129 |
caagttttgtttggcgtagtatttttagtgcaaagatgattgtccgatcaggtgctagatggaaaattgg |
27041060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 693
Target Start/End: Original strand, 34904652 - 34904689
Alignment:
| Q |
656 |
gagaaaaatggtcattattctgttagaagtgcatatcg |
693 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||| |
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| T |
34904652 |
gagaaaaatggtaattattctgttagtagtgcatatcg |
34904689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 30093593 - 30093508
Alignment:
| Q |
40 |
tatgtcatgagtattttcttgctgccctctactctaattgattctattgagaaaatgttgaatgcattttggtggggaaatggagg |
125 |
Q |
| |
|
||||| ||||| ||||||| |||| |||||||| |||||||||| || ||||||||| |||| || ||||||||||||||||| |
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| T |
30093593 |
tatgttatgagccttttcttattgccttctactcttattgattctactgggaaaatgttaaatggtttctggtggggaaatggagg |
30093508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 30093311 - 30093205
Alignment:
| Q |
345 |
caagttttgtgtggtgaagtatttttagtgcaaagaggattgttcgagatggtgctagatgaaaaattggcaatggtatgaacatcccaattttttaggc |
444 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| || |||| || || |||| | ||| ||||| || |||||||| || ||||||||||| | || |
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| T |
30093311 |
caagtttcgtgtggcgaagtatttttagtgcaaaaagcgttgtccgtgaaggtgtcacatggaaaatcgggaatggtataaatatcccaattttcgaagc |
30093212 |
T |
|
| Q |
445 |
gccttgg |
451 |
Q |
| |
|
||||||| |
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| T |
30093211 |
gccttgg |
30093205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 693
Target Start/End: Complemental strand, 38533708 - 38533671
Alignment:
| Q |
656 |
gagaaaaatggtcattattctgttagaagtgcatatcg |
693 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38533708 |
gagaaaaatggccattattctgtgagaagtgcatatcg |
38533671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 693
Target Start/End: Complemental strand, 38555926 - 38555889
Alignment:
| Q |
656 |
gagaaaaatggtcattattctgttagaagtgcatatcg |
693 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38555926 |
gagaaaaatggccattattctgtgagaagtgcatatcg |
38555889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 3898 - 3813
Alignment:
| Q |
40 |
tatgtcatgagtattttcttgctgccctctactctaattgattctattgagaaaatgttgaatgcattttggtggggaaatggagg |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |||| || |||||||||||||| ||||| | |||| || |||||||||||| |||| |
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| T |
3898 |
tatgtcatgagtattttcttattgccttctaaccttattgattctattgactaaatgctcaatgtcttctggtggggaaattgagg |
3813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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