View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10110_2D_low_61 (Length: 260)
Name: NF10110_2D_low_61
Description: NF10110_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10110_2D_low_61 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0178 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 8340673 - 8340418
Alignment:
| Q |
5 |
gttgttgtcgcggtggtttacgatgtttcggtgcgaaagagaacaagtttcgtcgccgaagaagaatagtgtctgcaaacacgttagcaccccaacgctc |
104 |
Q |
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| T |
8340673 |
gttgttgtcgcggtggtttacgatgtttcggtgcgaaagagaataagtttcgtcgccgaagaagaatagtgtctgcaaacacgttagcaccccaacgctc |
8340574 |
T |
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| Q |
105 |
aagtcgatgtttggaaaaggtggattatgtgctaaaattgtgtgaatgaaagtaagtgtacccgagcgtgacactgaatcacacttatataaccatggat |
204 |
Q |
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| T |
8340573 |
aagtcgatgtttggaaaaggtggattatgtgctaaaattgtgtgaatgaaagtaagtgtacccgagcgtgacactgaatcacacttatataaccatggat |
8340474 |
T |
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| Q |
205 |
agtgataactgtctctgagttttgtgcgtaaatgctggaggtcgttggacagggac |
260 |
Q |
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| T |
8340473 |
agtgataactgtctctaagttttgtgcgtaaatgctagaggttgttggacatggac |
8340418 |
T |
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Target: scaffold0178 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 3237 - 3165
Alignment:
| Q |
85 |
acgttagcaccccaacgctcaagtcgatgtttggaaaaggtggattatgtgctaaaattgtgtgaatgaaagt |
157 |
Q |
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| T |
3237 |
acgttagcactccaacgctcaagtcaatatatgaaagaggtggattgcgtgagaaaattgtgtgaatgaaagt |
3165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 4520 - 4484
Alignment:
| Q |
73 |
gtgtctgcaaacacgttagcaccccaacgctcaagtc |
109 |
Q |
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| T |
4520 |
gtgtctgcaagcacgttagcactccaacgctcaagtc |
4484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 30680987 - 30681023
Alignment:
| Q |
73 |
gtgtctgcaaacacgttagcaccccaacgctcaagtc |
109 |
Q |
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| T |
30680987 |
gtgtctgcaatcacgttagcactccaacgctcaagtc |
30681023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 30808725 - 30808621
Alignment:
| Q |
53 |
ttcgtcgccgaagaagaatagtgtctgcaaacacgttagcaccccaacgctcaagtcgatgtttggaaaaggtggattatgtgctaaaattgtgtgaatg |
152 |
Q |
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| T |
30808725 |
ttcgccgccgaaagagaatggtgcctgcagacacgttagcactccaacactcaagtcggtatgtgaaagaggtggattgtgtgtgaaaactgggtgaata |
30808626 |
T |
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| Q |
153 |
aaagt |
157 |
Q |
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||||| |
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| T |
30808625 |
aaagt |
30808621 |
T |
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